Browse Element(s) Details


Os.49689.1.S1_at

Description gb:AK102061.1
DB_XREF= gi:32987270
TID=Os.49689.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49689 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033082D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033082D10, full insert sequence.
FL= gb:AK102061.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3428011/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34258OsAffx.29504.1.S1_at11/118+21354724..21355037inhibitor I family protein
LOC_Os08g34270Os.4658.2.S1_at11/118+21368062..21372300expressed protein
LOC_Os08g34270Os.4658.1.S1_x_at11/118+21368062..21372300expressed protein
LOC_Os08g34270Os.4658.1.S1_at9/118+21368062..21372300expressed protein
LOC_Os08g34280Os.49689.1.S1_at11/118+21373618..21380814NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os08g34280Os.8544.1.S1_at10/118+21373618..21380814NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os08g34280Os.49292.2.S1_x_at1/118+21373618..21380814NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os08g34290Os.52887.1.S1_at10/118+21390633..21392921chorismate mutase family protein, expressed
LOC_Os08g34300Os.51887.1.S1_x_at10/118+21394039..21397849retrotransposon protein, putative, unclassified
LOC_Os08g34300Os.51887.1.S1_at8/118+21394039..21397849retrotransposon protein, putative, unclassified
LOC_Os08g34310NANA8+21398496..21402395hypothetical protein
LOC_Os08g34320Os.56242.1.S1_x_at11/118+21404146..21410273expressed protein
LOC_Os08g34320OsAffx.29505.1.S1_at10/118+21404146..21410273expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0016621molecular_functioncinnamoyl-CoA reductase activity
GO:0045551molecular_functioncinnamyl-alcohol dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49689.1.S1_at--928--151Chr08:21380126..21380150 (25 bp)
ATTATTTTCTCGGTTTCTCACGCTG
LOC_Os08g34280
Os.49689.1.S1_at--867--6831Chr08:21380114..21380138 (25 bp)
GTTTCTCACGCTGTTCATCATGGGC
LOC_Os08g34280
Os.49689.1.S1_at--676--4151Chr08:21380090..21380114 (25 bp)
CGCCCATGGCGTACGTTAATTAGTT
LOC_Os08g34280
Os.49689.1.S1_at--723--131Chr08:21380072..21380096 (25 bp)
ATTAGTTGCGACTGACACGAGTAGC
LOC_Os08g34280
Os.49689.1.S1_at--447--1871Chr08:21380056..21380080 (25 bp)
ACGAGTAGCGCATTGCATGTGTCTT
LOC_Os08g34280
Os.49689.1.S1_at--35--5011Chr08:21380042..21380066 (25 bp)
GCATGTGTCTTTTTGCAGGAGCAGA
LOC_Os08g34280
Os.49689.1.S1_at--507--2371Chr08:21379843..21379867 (25 bp)
AAACCAGGGTAGGTGCATCTGCAAA
LOC_Os08g34280
Os.49689.1.S1_at--170--9511Chr08:21379792..21379816 (25 bp)
TCTCTGCCCTTAATTGCACGTACTA
LOC_Os08g34280
Os.49689.1.S1_at--608--10491Chr08:21379779..21379803 (25 bp)
TTGCACGTACTAATTAACCTTGGAT
LOC_Os08g34280
Os.49689.1.S1_at--517--2631Chr08:21379764..21379788 (25 bp)
AACCTTGGATACCTTTTGCTTCATC
LOC_Os08g34280
Os.49689.1.S1_at--741--9071Chr08:21379748..21379772 (25 bp)
TGCTTCATCATGTTATTGTTACCTT
LOC_Os08g34280
Target Sequence 
ATTATTTTCTCGGTTTCTCACGCTGTTCATCATGGGCGCCCATGGCGTACGTTAATTAGTTGCGACTGACACGAGTAGCG
CATTGCATGTGTCTTTTTGCAGGAGCAGATGGTGGAGCCGGCGGTGAGGGGGACGGAGTACGTGATAAACGCGGCGGCGG
AGGCCGGCACGGTGCGGCGGGTGGTGTTCACGTCGTCGATCGGGGCGGTGACCATGGACCCCAACCGCGGGCCCGACGTC
GTCGTCGACGAGTCCTGCTGGAGCGACCTTGACTATTGCAAGGAAACCAGGGTAGGTGCATCTGCAAAATCTAATCTAAT
TTCTTGATGATCTCTCTCTGCCCTTAATTGCACGTACTAATTAACCTTGGATACCTTTTGCTTCATCATGTTATTGTTAC
CTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49689.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis