Browse Element(s) Details

Os.49692.1.S1_at

Description

gb:AK120657.1
DB_XREF= gi:37990280
TID=Os.49692.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49692 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013158E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013158E04, full insert sequence.
FL= gb:AK120657.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g39470	3/11	Transferase family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g39440	OsAffx.28007.1.S1_at	11/11	6	+	23413389..23414493	Amidophosphoribosyltransferase, chloroplast precursor, putative
LOC_Os06g39450	Os.2987.3.S1_x_at	1/11	6	+	23424305..23428378	transposon protein, putative, unclassified
LOC_Os06g39460	Os.56073.1.S1_at	9/11	6	+	23429642..23434093	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g39460	Os.8753.4.S1_x_at	8/11	6	+	23429642..23434093	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g39460	Os.46557.2.S1_x_at	6/11	6	+	23429642..23434093	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g39460	Os.46557.1.S1_x_at	6/11	6	+	23429642..23434093	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g39460	Os.46557.1.S1_at	6/11	6	+	23429642..23434093	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g39460	Os.8753.4.S1_at	2/11	6	+	23429642..23434093	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g39460	OsAffx.5618.1.S1_x_at	1/11	6	+	23429642..23434093	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g39460	OsAffx.5618.1.S1_at	1/11	6	+	23429642..23434093	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g39470	Os.49692.1.S1_at	3/11	6	+	23437878..23439327	Transferase family protein, expressed
LOC_Os06g39470	OsAffx.9719.1.S1_x_at	1/11	6	+	23437878..23439327	Transferase family protein, expressed
LOC_Os06g39480	Os.50945.1.S1_at	11/11	6	+	23441893..23448456	transcription elongation factor, putative, expressed
LOC_Os06g39480	Os.50945.1.S2_at	10/11	6	+	23441893..23448456	transcription elongation factor, putative, expressed
LOC_Os06g39500	OsAffx.28009.1.S1_at	11/11	6	+	23450678..23451183	hypothetical protein
LOC_Os06g39510	OsAffx.15841.1.S1_at	11/11	6	+	23455589..23455906	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
GO:0016740	molecular_function	transferase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.49692.1.S1_at--285--581	1	Chr06:23439247..23439271 (25 bp)	GACGCCTTCCACAACGACATGATGC	LOC_Os06g39470
Os.49692.1.S1_at--384--565	1	Chr06:23439262..23439286 (25 bp)	GACATGATGCGCCTCGACTAATAAC	LOC_Os06g39470
Os.49692.1.S1_at--479--153	1	Chr06:23439278..23439302 (25 bp)	ACTAATAACCGAGCGAGCTCACCGT	LOC_Os06g39470
Os.49692.1.S1_at--918--209	1	Chr06:23439315..23439339 (25 bp)	ACATCGCCGGCGCAATTTGATTCGT	NONE
Os.49692.1.S1_at--607--839	1	Chr06:23439323..23439347 (25 bp)	GGCGCAATTTGATTCGTTCTTTTTT	NONE
Os.49692.1.S1_at--839--875	1	Chr06:23439382..23439406 (25 bp)	TGTACGCACGCCATGGCATTCATTC	NONE
Os.49692.1.S1_at--741--357	1	Chr06:23439398..23439422 (25 bp)	CATTCATTCGCCGTAGTAGACTAGA	NONE
Os.49692.1.S1_at--1092--309	1	Chr06:23439463..23439487 (25 bp)	AATATATATGTATACGCGCCTGTAA	NONE
Os.49692.1.S1_at--672--995	1	Chr06:23439475..23439499 (25 bp)	TACGCGCCTGTAATGCGAAGCATTT	NONE
Os.49692.1.S1_at--837--495	1	Chr06:23439494..23439518 (25 bp)	GCATTTGTGCTTATTCCTTCGATTA	NONE
Os.49692.1.S1_at--269--1019	1	Chr06:23439521..23439545 (25 bp)	TATTGAGACCGGGTTCCCCTTTGCT	NONE

Target Sequence

GACGCCTTCCACAACGACATGATGCGCCTCGACTAATAACCGAGCGAGCTCACCGTCCGCCGCCACCGACATCGCCGGCG
CAATTTGATTCGTTCTTTTTTTCTTTTTTTTTTTGGGTTTTTTCTCTCCTCTCGCTGTACGCACGCCATGGCATTCATTC
GCCGTAGTAGACTAGAAGAAGAAAATTATATATATATCAGATTAAAAAATACGATAAATATATATGTATACGCGCCTGTA
ATGCGAAGCATTTGTGCTTATTCCTTCGATTAATTATTGAGACCGGGTTCCCCTTTGCT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis