Browse Element(s) Details


Os.49701.1.S1_at

Description gb:AK068271.1
DB_XREF= gi:32978289
TID=Os.49701.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49701 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013139L19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013139L19, full insert sequence.
FL= gb:AK068271.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3399010/11Harpin-induced protein 1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33950Os.52509.1.S1_at11/114+20362600..20367754Transcription factor E2F/dimerisation partner family protein, expressed
LOC_Os04g33960OsAffx.3987.1.S1_at10/114+20369845..20371139hypothetical protein
LOC_Os04g33970OsAffx.14123.1.S1_at9/114+20372603..203761282-cys peroxiredoxin BAS1, chloroplast precursor, putative, expressed
LOC_Os04g33970Os.26986.1.A1_at7/114+20372603..203761282-cys peroxiredoxin BAS1, chloroplast precursor, putative, expressed
LOC_Os04g33970Os.46481.2.S1_x_at1/114+20372603..203761282-cys peroxiredoxin BAS1, chloroplast precursor, putative, expressed
LOC_Os04g33980Os.56332.1.S1_at11/114+20380462..20383839transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g33990Os.49701.1.S1_at10/114+20391996..20393143Harpin-induced protein 1 containing protein, expressed
LOC_Os04g34000OsAffx.26318.1.S1_at11/114+20399726..20405837digalactosyldiacylglycerol synthase 1, putative, expressed
LOC_Os04g34010Os.7467.1.S1_at11/114+20405435..20408753aluminum-activated malate transporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49701.1.S1_at--196--2231Chr04:20392568..20392592 (25 bp)
ACAAGGACGTGTCGGTGTGGTCGCC
LOC_Os04g33990
Os.49701.1.S1_at--1100--1811Chr04:20392499..20392523 (25 bp)
ACGCCATGAGGCAGGACATCGCGGC
LOC_Os04g33990
Os.49701.1.S1_at--255--7471Chr04:20392248..20392272 (25 bp)
GTGTGACGCGAAATCACCGTGCAAC
LOC_Os04g33990
Os.49701.1.S1_at--39--3471Chr04:20392220..20392244 (25 bp)
CAGTGAGCGTGTACGCTAGCTTGTC
LOC_Os04g33990
Os.49701.1.S1_at--281--1551Chr04:20392203..20392227 (25 bp)
AGCTTGTCGCGGGAGAACGCACGCA
LOC_Os04g33990
Os.49701.1.S1_at--422--4891Chr04:20392090..20392114 (25 bp)
GCTTATCGAGTCAGCGCGTCTTCCC
LOC_Os04g33990
Os.49701.1.S1_at--1160--4191Chr04:20392052..20392076 (25 bp)
CCCCAATTCTGAATCTGTGCAGAAT
LOC_Os04g33990
Os.49701.1.S1_at--463--3891Chr04:20392038..20392062 (25 bp)
CTGTGCAGAATAAAAGGCCACTTTT
LOC_Os04g33990
Os.49701.1.S1_at--381--8431Chr04:20392023..20392047 (25 bp)
GGCCACTTTTATATGTATACATCCG
LOC_Os04g33990
Os.49701.1.S1_at--19--3551Chr04:20392004..20392028 (25 bp)
CATCCGCTTAGTATCATTTGTCATT
LOC_Os04g33990
Os.49701.1.S1_at--714--10051NONE
TAGTATCATTTGTCATTGTCGAAGC
NONE
Target Sequence 
ACAAGGACGTGTCGGTGTGGTCGCCGGTGATGTCCGGCGAGTNGGTGCCCGTGGGGCAGTACGTGGCGGACGCCATGAGG
CAGGACATCGCGGCGGGCTACGTGCTGCTGCACGTCAAGGTGGACGGCCGCGTCAAGTGGAAGGTCGGCAGCTGGGTCTC
CGGCGGCTACCACCTCTTCGTCACGTGCCCGGCCCTGCTCGCCGCCAGCGGCGGCAACGTCGGCGGCGCCTTCGCCATGA
GCGCCACGGCGGGCGGCGGCGCCGGCGGCAACGCCACCGTCTCGCTCAAGTTCGCGCAGGCGGCGGACTGCACCGTCNAC
GTGTGACGCGAAATCACCGTGCAACCCCCAGTGAGCGTGTACGCTAGCTTGTCGCGGGAGAACGCACGCACGGCGGCGCC
NTGAGAGCTACAGACGCAACGGNANCGGNNCACCTCGCCGAAGTAATNAGTNTCGGATTAGCAATTNNNACAGTGNANGC
TTATCGAGTCAGCGCGTCTTCCCCCCCTCCCCCAATTCTGAATCTGTGCAGAATAAAAGGCCACTTTTATATGTATACAT
CCGCTTAGTATCATTTGTCATTGTCGAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49701.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis