Browse Element(s) Details


Os.49746.1.S1_at

Description gb:AY581256.1
DB_XREF= gi:46371869
TID=Os.49746.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49746 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) induced protein MgI1 mRNA, complete cds.
PROD=induced protein MgI1
FL= gb:AY581256.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7402011/11myb-like DNA-binding domain, SHAQKYF class family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73970Os.10616.2.S1_x_at11/111+43175076..43179858expressed protein
LOC_Os01g73970Os.10616.1.S1_a_at11/111+43175076..43179858expressed protein
LOC_Os01g73980Os.9015.1.S1_at11/111+43182505..43184314Caricain precursor, putative, expressed
LOC_Os01g73990Os.45964.1.S1_at11/111+43185629..43187346Cytochrome b5, putative, expressed
LOC_Os01g74000Os.24891.2.S1_x_at11/111+43187671..43193462Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os01g74000Os.24891.2.S1_at11/111+43187671..43193462Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os01g74000Os.24891.1.A1_at11/111+43187671..43193462Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os01g74010Os.14644.1.S1_at11/111+43197372..43199534Streptomyces cyclase/dehydrase family protein, expressed
LOC_Os01g74010Os.14644.1.S1_a_at11/111+43197372..43199534Streptomyces cyclase/dehydrase family protein, expressed
LOC_Os01g74020Os.49746.1.S1_at11/111+43201121..43202363myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g74030Os.14111.1.S1_s_at11/111+43203415..43209812BPM, putative, expressed
LOC_Os01g74040Os.38236.1.S1_at11/111+43211801..43213078Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g74040Os.38236.2.S1_x_at11/111+43211801..43213078Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g74050NANA1+43216293..43217258transposon protein, putative, unclassified
LOC_Os01g74060NANA1+43218989..43219558transposon protein, putative, unclassified
LOC_Os01g74070NANA1+43220068..43222830transposon protein, putative, unclassified
LOC_Os01g74080NANA1+43223611..43226771retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0007623biological_processcircadian rhythm
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49746.1.S1_at--356--8871Chr01:43201671..43201695 (25 bp)
TGATGAACGTGGAGGGCCTCACCCG
LOC_Os01g74020
Os.49746.1.S1_at--610--3811Chr01:43201627..43201651 (25 bp)
CTCCAGAAGTATCGCCTCTACGTGA
LOC_Os01g74020
Os.49746.1.S1_at--1002--9931Chr01:43201609..43201633 (25 bp)
TACGTGAAGCGGATGCAGGGCCTCT
LOC_Os01g74020
Os.49746.1.S1_at--377--9612Chr11:12774779..12774972 (25 bp)
TCATCATCATTTCATTTCCACATCT
NONE
Os.49746.1.S1_at--1082--9891Chr01:43201359..43201383 (25 bp)
TACTACTCCATAACGAAGGTGTTTC
LOC_Os01g74020
Os.49746.1.S1_at--56--10491Chr01:43201275..43201299 (25 bp)
TTAAGGGCAAAGTGTATCCATCCAT
LOC_Os01g74020
Os.49746.1.S1_at--126--591Chr01:43201248..43201272 (25 bp)
ATCCACGCTGTTTGTTTGTAGCTGT
LOC_Os01g74020
Os.49746.1.S1_at--567--10751Chr01:43201217..43201241 (25 bp)
TTGAGCTGGATGCATGACATGTATC
LOC_Os01g74020
Os.49746.1.S1_at--152--751Chr01:43201199..43201223 (25 bp)
ATGTATCTCTATGTACCTACCTGCG
LOC_Os01g74020
Os.49746.1.S1_at--5--6991Chr01:43201187..43201211 (25 bp)
GTACCTACCTGCGTGACAAAGGCAT
LOC_Os01g74020
Os.49746.1.S1_at--776--4951Chr01:43201159..43201183 (25 bp)
GCATATGTATGGTTCCCTTGCAATT
LOC_Os01g74020
Target Sequence 
TGATGAACGTGGAGGGCCTCACCCGGGAGAACGTCGCCAGCCACCTCCAGAAGTATCGCCTCTACGTGAAGCGGATGCAG
GGCCTCTCCAACGAGGGCCCTTCCCCCTCCGACCACATCTTCGCCTCCACCCCCGTCCCCCACGCCTCCCTCCACGACCA
GGTTCCTTCTCCTTACCACCCCCACCCCCACCACCACTCCTACAACAACGCCGCCTATGCCGCCACCGTCTCCTCCTACC
ACCACTACCACCACGCCAACCACTGATCCATTCCTTCTCATCATCATTTCATTTCCACATCTATATACCACATACTACTC
CATAACGAAGGTGTTTCATCAATAAGAGAAGAGAAGAGAAGAGAATGCTCCCTCAACTGTAAACTCCTAATTCTAATTAA
GGGCAAAGTGTATCCATCCATCCATCCACGCTGTTTGTTTGTAGCTGTTGTTAATTGAGCTGGATGCATGACATGTATCT
CTATGTACCTACCTGCGTGACAAAGGCATCATGCATATGTATGGTTCCCTTGCAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49746.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis