Browse Element(s) Details


Os.49764.1.S1_at

Description gb:AY549310.1
DB_XREF= gi:45183574
GEN=LP1
TID=Os.49764.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49764 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) little protein 1 (LP1) mRNA, complete cds.
PROD=little protein 1
FL= gb:AK063634.1 gb:AY549310.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g456605/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45600OsAffx.9239.1.S1_at7/111+26234822..26235079hypothetical protein
LOC_Os01g45620Os.34984.3.S1_x_at11/111+26244484..26249824Protein kinase domain containing protein, expressed
LOC_Os01g45620Os.34984.1.A1_at11/111+26244484..26249824Protein kinase domain containing protein, expressed
LOC_Os01g45624Os.34984.2.S1_at11/111+26250302..26250997Oleosin family protein, expressed
LOC_Os01g45630NANA1+26252228..26252770transposon protein, putative, Mutator sub-class
LOC_Os01g45640Os.1818.1.S1_at10/111+26253084..26255056Tat pathway signal sequence family protein, expressed
LOC_Os01g45640Os.45997.1.S1_x_at10/111+26253084..26255056Tat pathway signal sequence family protein, expressed
LOC_Os01g45650OsAffx.23672.1.S1_at11/111+26255438..26256574F-box domain containing protein
LOC_Os01g45650Os.54052.1.S1_at1/111+26255438..26256574F-box domain containing protein
LOC_Os01g45660Os.49764.1.S1_at5/111+26258223..26258447hypothetical protein
LOC_Os01g45670OsAffx.23673.1.S1_at11/111+26260498..26260812hypothetical protein
LOC_Os01g45690NANA1+26267348..26273020transposon protein, putative, unclassified
LOC_Os01g45700OsAffx.23674.2.S1_s_at11/111+26276323..26277012expressed protein
LOC_Os01g45700Os.6839.1.S1_at4/111+26276323..26277012expressed protein
LOC_Os01g45710OsAffx.23675.1.S1_at10/111+26279489..26280928hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49764.1.S1_at--561--8291Chr01:26258518..26258542 (25 bp)
GGCATTCCAAGCAGAGGCGCTAGTA
NONE
Os.49764.1.S1_at--1005--6211Chr01:26258505..26258529 (25 bp)
GAGGCGCTAGTAGAGCTCGTCGATC
NONE
Os.49764.1.S1_at--364--1591Chr01:26258492..26258516 (25 bp)
AGCTCGTCGATCGGCAAGCAAGCGG
NONE
Os.49764.1.S1_at--875--6191Chr01:26258466..26258490 (25 bp)
GAGGCGGAGGACTTCGGTTTCGTGC
NONE
Os.49764.1.S1_at--827--6171Chr01:26258460..26258484 (25 bp)
GAGGACTTCGGTTTCGTGCGGCGGC
NONE
Os.49764.1.S1_at--476--5071Chr01:26258434..26258458 (25 bp)
GCAGCGAGGAGATGGCTTACGTGCC
NONE
Os.49764.1.S1_at--768--10471Chr01:26258418..26258442 (25 bp)
TTACGTGCCGGTGTGCGTGCAGTGC
LOC_Os01g45660
Os.49764.1.S1_at--841--7331Chr01:26258402..26258426 (25 bp)
GTGCAGTGCGGGACGCACAGCAACC
LOC_Os01g45660
Os.49764.1.S1_at--542--9111Chr01:26258396..26258420 (25 bp)
TGCGGGACGCACAGCAACCCGTGCA
LOC_Os01g45660
Os.49764.1.S1_at--235--5791Chr01:26258352..26258376 (25 bp)
GACGCTGGGTTTCGTGGCGTTCGTG
LOC_Os01g45660
Os.49764.1.S1_at--1162--4551Chr01:26258299..26258323 (25 bp)
GCGCGTTCGTGTACCTGTTCCGCCA
LOC_Os01g45660
Target Sequence 
GGCATTCCAAGCAGAGGCGCTAGTAGAGCTCGTCGATCGGCAAGCAAGCGGCGAGGCGGAGGACTTCGGTTTCGTGCGGC
GGCGGCAGCGAGGAGATGGCTTACGTGCCGGTGTGCGTGCAGTGCGGGACGCACAGCAACCCGTGCAGGTGCAAGGTGCT
CGGCCCGACGCTGGGTTTCGTGGCGTTCGTGGTGGCCGGCGTCGTGGAGTGGCCGCTCGGCGCGTTCGTGTACCTGTTCC
GCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49764.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis