Browse Element(s) Details


Os.4979.1.S1_at

Description gb:AK101555.1
DB_XREF= gi:32986764
TID=Os.4979.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4979 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033050A17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033050A17, full insert sequence.
FL= gb:AK101555.1 gb:AK101539.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4593011/11IQ calmodulin-binding motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45890Os.19143.1.S1_at11/115+26508541..26513219tRNAHis guanylyltransferase family protein, expressed
LOC_Os05g45900OsAffx.4629.1.S1_at11/115+26512877..26518005Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os05g45900Os.25117.1.A1_at1/115+26512877..26518005Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os05g45910Os.7768.1.S1_at8/115+26521718..26523938expressed protein
LOC_Os05g45920OsAffx.15118.1.S1_at8/115+26525016..26529165S1 RNA binding domain containing protein, expressed
LOC_Os05g45930Os.4979.1.S1_at11/115+26533272..26537588IQ calmodulin-binding motif family protein, expressed
LOC_Os05g45940OsAffx.27334.1.S1_at11/115+26541060..26541486hypothetical protein
LOC_Os05g45950Os.4771.1.S1_at11/115+26544902..26548295Outer mitochondrial membrane protein porin, putative, expressed
LOC_Os05g45960Os.14081.1.S1_at11/115+26551605..26557592aldehyde dehydrogenase, putative, expressed
LOC_Os05g45970Os.35344.3.S1_x_at8/115+26557854..26564794transposon protein, putative, Mutator sub-class
LOC_Os05g45970Os.35344.18.S1_x_at8/115+26557854..26564794transposon protein, putative, Mutator sub-class
LOC_Os05g45970OsAffx.22940.5.S1_at7/115+26557854..26564794transposon protein, putative, Mutator sub-class
LOC_Os05g45970OsAffx.22940.5.S1_x_at5/115+26557854..26564794transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4979.1.S1_at--760--5531Chr05:26536288..26536312 (25 bp)
GAAAAATGGCTTCACCAGGCGCCAT
LOC_Os05g45930
Os.4979.1.S1_at--699--7031Chr05:26536356..26536380 (25 bp)
GTACACAAAGGCCAACCCATGCTGG
LOC_Os05g45930
Os.4979.1.S1_at--898--6671Chr05:26537217..26537241 (25 bp)
GTTGCGCAACATTCGGGTGGATGAC
LOC_Os05g45930
Os.4979.1.S1_at--526--6231Chr05:26537248..26537272 (25 bp)
GATGGCGTCTGCAGTTTGATCCAAT
LOC_Os05g45930
Os.4979.1.S1_at--1108--6351Chr05:26537265..26537289 (25 bp)
GATCCAATTGTTTTGCTTCCGATGT
LOC_Os05g45930
Os.4979.1.S1_at--948--551Chr05:26537308..26537332 (25 bp)
ATCCGTGACAGTGAACCAGCTGCTT
LOC_Os05g45930
Os.4979.1.S1_at--587--8811Chr05:26537333..26537357 (25 bp)
TGTTGTGGTTTGTATCTGGTGCGAT
LOC_Os05g45930
Os.4979.1.S1_at--86--10171Chr05:26537408..26537432 (25 bp)
TATAGCTGAAGCGTTTCCGGTTTGC
LOC_Os05g45930
Os.4979.1.S1_at--688--10611Chr05:26537422..26537446 (25 bp)
TTCCGGTTTGCTTTTGATTTCCCTG
LOC_Os05g45930
Os.4979.1.S1_at--419--10431Chr05:26537522..26537546 (25 bp)
TTATCCCATTTGGACATCTCTTCTG
LOC_Os05g45930
Os.4979.1.S1_at--208--9531Chr05:26537538..26537562 (25 bp)
TCTCTTCTGCGTTTTCTTCTTATAA
LOC_Os05g45930
Target Sequence 
GAAAAATGGCTTCACCAGGCGCCATTCCCTCCCATCCTCTAATGGNTAAGTTGAACTCGCACTCGCCGCGTACACAAAGG
CCAACCCATGCTGGTGGCAAAGANGGGAGTGAAGGCTGACAAGTCTATGCTATCATCAAGAGACGCAAGTGAAAGACCTG
CCAAAGCTGAATGGAAACGCTGAAGAGTTCATCGATCGAGCACCAANTCCTCCTGTTGGGTTGCGCAACATTCGGGTGGA
TGACGACGATGATGGCGTCTGCAGTTTGATCCAATTGTTTTGCTTCCGATGTAAAAAAGATGTTCTCCCCATCCGTGACA
GTGAACCAGCTGCTTTGTTGTGGTTTGTATCTGGTGCGATTTGACTTATTTCTATAGGGTTTTTGCGTCCTTTCCTCTGC
CATGTTCATGTATAGCTGAAGCGTTTCCGGTTTGCTTTTGATTTCCCTGCCTCCCCGAGACACCCTGCTTTTGTTGAGCA
AGAGAGCTGCTGATGTTAGAGAGAACTTGTTGGATTGAACAATCTTATCCCATTTGGACATCTCTTCTGCGTTTTCTTCT
TATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4979.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis