Browse Element(s) Details


Os.49794.1.S1_at

Description gb:AK111609.1
DB_XREF= gi:37988272
TID=Os.49794.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49794 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013102N10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013102N10, full insert sequence.
FL= gb:AK111609.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0697011/11HEN1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06950Os.6600.1.S1_at11/117+3410019..3422806Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os07g06960Os.44434.1.S1_at9/117+3424580..3426767pentatricopeptide, putative
LOC_Os07g06970Os.49794.1.S1_at11/117+3427782..3433034HEN1, putative, expressed
LOC_Os07g06980Os.21399.1.S1_a_at11/117+3434310..3443018histone deacetylase HDA110 isoform 1, putative, expressed
LOC_Os07g06990Os.28059.5.A1_x_at11/117+3443285..3444565hypothetical protein
LOC_Os07g07000Os.28059.1.S1_a_at11/117+3444643..3448633Syntaxin 132, putative, expressed
LOC_Os07g07000OsAffx.31589.1.S1_s_at1/117+3444643..3448633Syntaxin 132, putative, expressed
LOC_Os07g07010OsAffx.28317.1.S1_at11/117+3452188..3455354ALG6, ALG8 glycosyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009909biological_processregulation of flower development
GO:0010093biological_processspecification of floral organ identity
GO:0035196biological_processmiRNA-mediated gene silencing, production of miRNAs
GO:0035279biological_processmiRNA-mediated gene silencing, mRNA cleavage
GO:0003725molecular_functiondouble-stranded RNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49794.1.S1_at--525--9171Chr07:3428322..3428346 (25 bp)
TGCCCTACGGTGCTGATTGTTTCAA
LOC_Os07g06970
Os.49794.1.S1_at--1030--5511Chr07:3428229..3428253 (25 bp)
GAAAACGCTGGTCCTTGCAAGTTCC
LOC_Os07g06970
Os.49794.1.S1_at--926--6691Chr07:3428209..3428233 (25 bp)
GTTCCGAAACCATGACCACAAGTTC
LOC_Os07g06970
Os.49794.1.S1_at--860--6111Chr07:3428184..3428208 (25 bp)
GAGTGGACAAGATCCCAGTTCCAGC
LOC_Os07g06970
Os.49794.1.S1_at--475--1951Chr07:3428159..3428183 (25 bp)
ACTGGGCTACCGGACTCGCAGAAAA
LOC_Os07g06970
Os.49794.1.S1_at--382--2011Chr07:3428129..3428153 (25 bp)
ACTACAGCGTCGAGTTCAGTGGCGT
LOC_Os07g06970
Os.49794.1.S1_at--115--4971Chr07:3428008..3428032 (25 bp)
GCATCAACCTTATGAGCTTCTCTGG
LOC_Os07g06970
Os.49794.1.S1_at--861--511Chr07:3427969..3427993 (25 bp)
ATCGTTGCCATCTCACTGAGTTCTT
LOC_Os07g06970
Os.49794.1.S1_at--79--9811Chr07:3427918..3427942 (25 bp)
TAACTCTTCACCATGCTTGTAACTG
LOC_Os07g06970
Os.49794.1.S1_at--93--2531Chr07:3427835..3427859 (25 bp)
AACTCAAGATCGTGTCCCCGGATGT
LOC_Os07g06970
Os.49794.1.S1_at--354--3031Chr07:3427801..3427825 (25 bp)
AATGCCTTGGGCTGTGTTCTAAAGT
LOC_Os07g06970
Target Sequence 
TGCCCTACGGTGCTGATTGTTTCAACACCCAACTATGAATACAACCCTATCCTCCAGAGATCAGCTATGCCAAACAAGGA
AGAAGAACCAGAAGAAAACGCTGGTCCTTGCAAGTTCCGAAACCATGACCACAAGTTCGAGTGGACAAGATCCCAGTTCC
AGCACTGGGCTACCGGACTCGCAGAAAAGCACAACTACAGCGTCGAGTTCAGTGGCGTTGGCGGATCAGGCGATGAACCA
GGCTTCGCTTCCCAGATCGCTGTCTTCAGAAGAATGGCGTCGGGTCAAGATGAGGTTTGCCAGGAGGGAGAGCTGCATCA
ACCTTATGAGCTTCTCTGGGAATGGCCAAATGCATCGTTGCCATCTCACTGAGTTCTTGTGGTAGGGAGACACGACAACT
CTATTAACTCTTCACCATGCTTGTAACTGAGATGGAGATTCTGATTAGTACTGTAGTTGGCATTANCTTGTCGTCAGTAG
GAAACTCAACTCAAGATCGTGTCCCCGGATGTTGGTGGGTTAATGCCTTGGGCTGTGTTCTAAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49794.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis