Browse Element(s) Details


Os.49814.1.S1_at

Description gb:AK111721.1
DB_XREF= gi:37988384
TID=Os.49814.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.49814 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023026H17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023026H17, full insert sequence.
FL= gb:AK111721.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3794911/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37910Os.57443.1.S1_x_at11/119+21856391..21858472HMG1/2, putative, expressed
LOC_Os09g37910Os.7893.1.S1_at11/119+21856391..21858472HMG1/2, putative, expressed
LOC_Os09g37910Os.57484.1.S1_x_at2/119+21856391..21858472HMG1/2, putative, expressed
LOC_Os09g37920OsAffx.18040.1.S1_at11/119+21859936..21867685DNA repair helicase family protein, expressed
LOC_Os09g37930OsAffx.30183.1.S1_at11/119+21868379..21878106ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os09g37940OsAffx.30187.3.S1_at8/119+21878722..21879228hypothetical protein
LOC_Os09g37949Os.49814.1.S1_at11/119+21880684..21884141Protein kinase domain containing protein, expressed
LOC_Os09g37958NANA9+21886822..21888489legumin, putative
LOC_Os09g37967Os.55779.1.S1_at11/119+21891330..21892804Cupin family protein, expressed
LOC_Os09g37976Os.55742.1.S1_at10/119+21895086..21896501Cupin family protein, expressed
LOC_Os09g37990OsAffx.18041.1.S1_at8/119+21898382..21899005hypothetical protein
LOC_Os09g38000OsAffx.30184.1.S1_at10/119+21902233..21904578no apical meristem family protein, putative, expressed
LOC_Os09g38010OsAffx.30185.1.S1_at11/119+21907157..21909723NAC-domain containing protein 78, putative, expressed
LOC_Os09g38010OsAffx.30185.1.S1_s_at10/119+21907157..21909723NAC-domain containing protein 78, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49814.1.S1_at--697--6351Chr09:21881229..21881253 (25 bp)
GATGCCCAAGGTTTAGCTGATTTTC
LOC_Os09g37949
Os.49814.1.S1_at--346--4751Chr09:21881214..21881238 (25 bp)
GCTGATTTTCTTCGTCCAATTCTAG
LOC_Os09g37949
Os.49814.1.S1_at--710--8971Chr09:21881179..21881203 (25 bp)
TGAAAACAGACCCACAGCTGCAGCT
LOC_Os09g37949
Os.49814.1.S1_at--284--4931Chr09:21881157..21881181 (25 bp)
GCTTGCTTGAAGAATCCATGGCTTA
LOC_Os09g37949
Os.49814.1.S1_at--1100--831Chr09:21881140..21881164 (25 bp)
ATGGCTTAACTGATTCGACGATACG
LOC_Os09g37949
Os.49814.1.S1_at--786--5751Chr09:21881124..21881148 (25 bp)
GACGATACGGTGACTTTTGAAGCCT
LOC_Os09g37949
Os.49814.1.S1_at--307--3131Chr09:21881034..21881058 (25 bp)
AATTATGGCCTTGGTTCTTTGCCTT
LOC_Os09g37949
Os.49814.1.S1_at--772--10691Chr09:21881016..21881040 (25 bp)
TTGCCTTCTGCAAGCTTTCTGCTAG
LOC_Os09g37949
Os.49814.1.S1_at--587--8531Chr09:21880989..21881013 (25 bp)
TGGAGAGCTTGGTTTTTCTGATGCA
LOC_Os09g37949
Os.49814.1.S1_at--617--3611Chr09:21880879..21880903 (25 bp)
CTTGAGCTCAAGTTTCCTTTTTCTT
LOC_Os09g37949
Os.49814.1.S1_at--947--131Chr09:21880765..21880789 (25 bp)
ATTAACGTCAGCATGTGCGCTGGCC
LOC_Os09g37949
Target Sequence 
GATGCCCAAGGTTTAGCTGATTTTCTTCGTCCAATTCTAGATTTTACTCCTGAAAACAGACCCACAGCTGCAGCTTGCTT
GAAGAATCCATGGCTTAACTGATTCGACGATACGGTGACTTTTGAAGCCTAACAAGTAGAATCTTATACAAGNTATGTTG
ACTATCAATTACTCTGTTTGACTGAGAATGCAGAGAATTATGGCCTTGGTTCTTTGCCTTCTGCAAGCTTTCTGCTAGCT
TGGAGAGCTTGGTTTTTCTGATGCAGCTCAGTTTTCATAGAGCAAACAGTAGACACCCTCATNATCTGGATATTGATAGC
AAAGATGTTGGGGGTATCATCAGAGTGATTCTTGAGCTCAAGTTTCCTTTTTCTTTTATGAAATGCTTGACCATCATCAT
GTATCTGGATGTAGTAGCAGAATTTCCATTAGTGTGTTTTGGGTGTGGAGCTAGTGAAATGCTAATTAACGTCAGCATGT
GCGCTGGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49814.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis