Browse Element(s) Details


Os.49821.3.A1_at

Description gb:AK105576.1
DB_XREF= gi:32990785
TID=Os.49821.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49821 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-128-D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-128-D11, full insert sequence.
FL= gb:AK105576.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g291201/11Plant protein family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29074OsAffx.19542.3.S1_x_at4/1111+16341468..16345666retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g29090OsAffx.31197.1.S1_at11/1111+16347342..16350526NB-ARC domain containing protein
LOC_Os11g29100OsAffx.19062.1.S1_at11/1111+16357066..16357602hypothetical protein
LOC_Os11g29110OsAffx.19063.1.S1_at11/1111+16358534..16362735Leucine Rich Repeat family protein, expressed
LOC_Os11g29120Os.52599.1.S1_at6/1111+16364628..16370327Plant protein family protein, expressed
LOC_Os11g29120Os.49821.3.A1_at1/1111+16364628..16370327Plant protein family protein, expressed
LOC_Os11g29130OsAffx.17858.1.S1_at5/1111+16383767..16386672hypothetical protein
LOC_Os11g29140Os.10180.1.S1_at11/1111+16387470..16388232expressed protein
LOC_Os11g29140Os.53378.1.S1_s_at2/1111+16387470..16388232expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49821.3.A1_at--643--3192Chr08:21445713..21445737 (25 bp)
CAATCCCTTCCCTCTGTAATATATT
NONE
Os.49821.3.A1_at--579--10371Chr08:21445748..21445772 (25 bp)
TTTTTTCCTGAAGTACTCTCCCTGA
NONE
Os.49821.3.A1_at--198--9911Chr08:21445761..21445785 (25 bp)
TACTCTCCCTGAATATCTGATTCTC
NONE
Os.49821.3.A1_at--887--10371Chr08:21445795..21445819 (25 bp)
TTTTCAGTGCTCTGAATGCTCTGCT
NONE
Os.49821.3.A1_at--1085--3011Chr08:21445809..21445833 (25 bp)
AATGCTCTGCTGCATTCTGCTGCTA
NONE
Os.49821.3.A1_at--638--3551Chr08:21445852..21445876 (25 bp)
CATCTCCTCTACCATGTCGATGGAC
NONE
Os.49821.3.A1_at--1146--9071Chr08:21445890..21445914 (25 bp)
TGCTAAGGCTGCTGTCGTTGTCGTG
NONE
Os.49821.3.A1_at--613--3691Chr08:21446136..21446160 (25 bp)
CTATCCTGTCGTAGTGAGGCCCCAA
NONE
Os.49821.3.A1_at--438--7791Chr08:21446166..21446190 (25 bp)
GGTCCACTAGCAAGTCATGCAGCTT
NONE
Os.49821.3.A1_at--426--2851Chr08:21446177..21446201 (25 bp)
AAGTCATGCAGCTTCTCTTGGTGCA
NONE
Os.49821.3.A1_at--946--3631Chr08:21446203..21446227 (25 bp)
CTTCCTCACCTTCATTTTGATAACA
NONE
Target Sequence 
CAATCCCTTCCCTCTGTAATATATTTTTCTTCTCTTTTTTTTCCTGAAGTACTCTCCCTGAATATCTGATTCTCTGAATT
TCTTTTTCAGTGCTCTGAATGCTCTGCTGCATTCTGCTGCTACCTTGGCCCTGACAGCTCCATCTCCTCTACCATGTCGA
TGGACCGCACCTCGTCGCTGCTAAGGCTGCTGTCGTTGTCGTGGAAGTCGTTGAAGAAGACGGAGCCGTTGGAGTCGTTG
CGGTGGTCGTAGCCGAGCTCATGGGGCGCCGCCGCCGCCGCCATCGCCGCCGGCCGGTGGTTGGCCTCCCATTTCTCGGC
GGGCCCGTCTCCCTCCAGCATCCGGACCACCTCCGACATCCTCGGCCGGTGAGACGGCTGGAACTGGGTGCAGAGCAGCG
CCACCTGCACCATCTCCGCCACCTCTATCCTGTCGTAGTGAGGCCCCAAATCTTGGTCCACTAGCAAGTCATGCAGCTTC
TCTTGGTGCACCTTCCTCACCTTCATTTTGATAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49821.3.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis