Browse Element(s) Details

Os.49853.1.S1_a_at

Description

gb:AK112016.1
DB_XREF= gi:37988679
TID=Os.49853.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.49853 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013095B20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-304-E07, full insert sequence.
FL= gb:AK112002.1 gb:AK112016.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g09180	11/11	Protein kinase domain containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g09130	Os.54329.1.S1_at	11/11	6	+	4592917..4596946	Ligand-gated ion channel family protein, expressed
LOC_Os06g09140	NA	NA	6	+	4603421..4604035	hypothetical protein
LOC_Os06g09150	NA	NA	6	+	4604515..4605856	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g09160	OsAffx.30261.2.S1_s_at	11/11	6	+	4606807..4607109	hypothetical protein
LOC_Os06g09170	Os.53571.1.S1_at	11/11	6	+	4611262..4614893	Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os06g09180	Os.49853.1.S1_a_at	11/11	6	+	4615609..4617146	Protein kinase domain containing protein, expressed
LOC_Os06g09190	Os.57190.1.S1_at	11/11	6	+	4623189..4624518	Protein kinase domain containing protein, expressed
LOC_Os06g09200	OsAffx.10931.4.A1_at	10/11	6	+	4628402..4628992	hypothetical protein
LOC_Os06g09200	OsAffx.10931.2.S1_s_at	9/11	6	+	4628402..4628992	hypothetical protein
LOC_Os06g09210	Os.54734.1.S1_at	3/11	6	+	4629849..4631544	Cytochrome P450 family protein, expressed
LOC_Os06g09220	Os.54734.1.S1_at	10/11	6	+	4632667..4634470	Cytochrome P450 family protein, expressed
LOC_Os06g09220	OsAffx.15322.1.S1_x_at	1/11	6	+	4632667..4634470	Cytochrome P450 family protein, expressed
LOC_Os06g09230	OsAffx.15330.1.S1_at	11/11	6	+	4640564..4643874	serine threonine kinase, putative, expressed
LOC_Os06g09230	OsAffx.15330.1.S1_x_at	11/11	6	+	4640564..4643874	serine threonine kinase, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0000165	biological_process	MAPKKK cascade
GO:0009814	biological_process	defense response to pathogen, incompatible interaction
GO:0005634	cellular_component	nucleus
GO:0005737	cellular_component	cytoplasm
GO:0004708	molecular_function	MAP kinase kinase activity
GO:0016301	molecular_function	kinase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.49853.1.S1_a_at--470--607	1	Chr06:4616596..4616620 (25 bp)	GAGTTCAGAAGCTTCGTCGGCTACT	LOC_Os06g09180
Os.49853.1.S1_a_at--284--719	1	Chr06:4616611..4616635 (25 bp)	GTCGGCTACTGCCTTCAGAAGAATC	LOC_Os06g09180
Os.49853.1.S1_a_at--953--353	1	Chr06:4616720..4616744 (25 bp)	CATCGTCGTGACTGCCAATTCCATC	LOC_Os06g09180
Os.49853.1.S1_a_at--1101--315	1	Chr06:4616736..4616760 (25 bp)	AATTCCATCCGGTCATCGTGTCAAA	LOC_Os06g09180
Os.49853.1.S1_a_at--666--239	1	Chr06:4616758..4616782 (25 bp)	AAACTCCATTTCCATCTCATCAAGT	LOC_Os06g09180
Os.49853.1.S1_a_at--370--283	1	Chr06:4616779..4616803 (25 bp)	AAGTTCTTCATAGCCAATCCATTTT	LOC_Os06g09180
Os.49853.1.S1_a_at--1072--437	1	Chr06:4616791..4616815 (25 bp)	GCCAATCCATTTTCGAGTGTTCTTC	LOC_Os06g09180
Os.49853.1.S1_a_at--712--351	1	Chr06:4616822..4616846 (25 bp)	CATGATCGTTTTCATCCATTGCTGC	LOC_Os06g09180
Os.49853.1.S1_a_at--995--1055	2	Chr06:4616862..4616886 (25 bp)	TTCTTCCTCTCTACTGTTCTTTGAT	LOC_Os06g09180
Os.49853.1.S1_a_at--974--381	2	Chr06:4617054..4617078 (25 bp)	CTCCATTTCCACGATATTTTGCTTG	LOC_Os06g09180
Os.49853.1.S1_a_at--315--869	1	Chr06:4617107..4617131 (25 bp)	TGTGCAAGTTGCCACTCTTCAAAGT	LOC_Os06g09180

Target Sequence

GAGTTCAGAAGCTTCGTCGGCTACTGCCTTCAGAAGAATCCGGCGAAGCGGCCGTCCGCCGCGCAGCTGATGCAGCACCC
GTTCGTCGCCGGACCGCAGCCACAGCCACTCGCCGCCCCGCCGCCATCGTCGTGACTGCCAATTCCATCCGGTCATCGTG
TCAAACTCCATTTCCATCTCATCAAGTTCTTCATAGCCAATCCATTTTCGAGTGTTCTTCAAACACCATGATCGTTTTCA
TCCATTGCTGCTGCCCCAACTCAAGGTTCTTCCTCTCTACTGTTCTTTGATGTTGTTTTATTCACAATGATGATCAAATA
TTGAGTAAATCTGGTTTGTACAAAGGATTTTTTTTTCTACGAGATCAAGTACAGACATAATCCCACTTGTTAGCCAATTT
GCCATAAAATTCCCTTAGAAACGAAAATTTCCACTGTACAAGTAGCAGATTTTTTTTACTCCATTTCCACGATATTTTGC
TTGTTAGTGGTAAGCTGCTTAATGATGATAGTGTGCAAGTTGCCACTCTTCAAAGT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis