Browse Element(s) Details


Os.49855.1.S1_at

Description gb:AK112048.1
DB_XREF= gi:37988711
TID=Os.49855.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49855 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023055C13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-100-D12, full insert sequence.
FL= gb:AK099147.1 gb:AK112048.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5756011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57520OsAffx.3095.1.S1_at11/112+35236753..35237943DNA-binding protein, putative, expressed
LOC_Os02g57530Os.8423.1.S1_a_at11/112+35245712..35249336His Kinase A domain containing protein, expressed
LOC_Os02g57540Os.6282.1.S1_at11/112+35250300..35252362Ribosomal L28e protein family protein, expressed
LOC_Os02g57540Os.7054.1.S1_a_at1/112+35250300..35252362Ribosomal L28e protein family protein, expressed
LOC_Os02g57540Os.7054.2.S1_x_at1/112+35250300..35252362Ribosomal L28e protein family protein, expressed
LOC_Os02g57550OsAffx.12680.1.S1_at11/112+35255389..35255976hypothetical protein
LOC_Os02g57560Os.49855.1.S1_at11/112+35257337..35259524Protein kinase domain containing protein, expressed
LOC_Os02g57560OsAffx.30454.1.S1_x_at1/112+35257337..35259524Protein kinase domain containing protein, expressed
LOC_Os02g57570OsAffx.24906.1.S1_x_at11/112+35261791..35262961MatE family protein
LOC_Os02g57570OsAffx.24906.1.S1_at11/112+35261791..35262961MatE family protein
LOC_Os02g57580OsAffx.24907.1.S1_at11/112+35263349..35264388hypothetical protein
LOC_Os02g57580Os.9626.2.S1_x_at1/112+35263349..35264388hypothetical protein
LOC_Os02g57590Os.53192.1.S1_s_at11/112+35265730..35268909Fibrillarin-2, putative, expressed
LOC_Os02g57590Os.47666.1.S1_at11/112+35265730..35268909Fibrillarin-2, putative, expressed
LOC_Os02g57600Os.10392.1.S1_at11/112+35269321..35272692expressed protein
LOC_Os02g57600OsAffx.31551.1.S1_at1/112+35269321..35272692expressed protein
LOC_Os02g57610Os.19574.1.S1_at11/112+35274698..35278609hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os02g57620Os.19186.1.S1_at11/112+35280919..35284836expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49855.1.S1_at--594--9631Chr02:35257673..35257697 (25 bp)
TCAGGAAGACGTACAGGGACATGGT
LOC_Os02g57560
Os.49855.1.S1_at--928--5891Chr02:35257557..35257581 (25 bp)
GAGCTCTGGAGGAATTAATCAACGT
LOC_Os02g57560
Os.49855.1.S1_at--1128--3071Chr02:35257541..35257565 (25 bp)
AATCAACGTTTTGCTGTAAATATGC
LOC_Os02g57560
Os.49855.1.S1_at--178--6871Chr02:35257506..35257530 (25 bp)
GTATTCGTTAAAATTCTGCTCATGT
LOC_Os02g57560
Os.49855.1.S1_at--838--3151Chr02:35257495..35257519 (25 bp)
AATTCTGCTCATGTGTTGATGTTGT
LOC_Os02g57560
Os.49855.1.S1_at--668--7391Chr02:35257461..35257485 (25 bp)
GTGATCGAGCTAATCGCTGACACGA
LOC_Os02g57560
Os.49855.1.S1_at--815--4131Chr02:35257447..35257471 (25 bp)
CGCTGACACGATACGGTTGGAATGT
LOC_Os02g57560
Os.49855.1.S1_at--157--5291Chr02:35257428..35257452 (25 bp)
GAATGTGATTTTGCCTTCGTTACTT
LOC_Os02g57560
Os.49855.1.S1_at--1059--10591Chr02:35257413..35257437 (25 bp)
TTCGTTACTTGTCCATCTGGTTTTG
LOC_Os02g57560
Os.49855.1.S1_at--853--7871Chr02:35257395..35257419 (25 bp)
GGTTTTGTTCATCACGTTCTGGATT
LOC_Os02g57560
Os.49855.1.S1_at--323--7551Chr02:35257345..35257369 (25 bp)
GGGCCATTTGTTATTACCGATGTTT
LOC_Os02g57560
Target Sequence 
TCAGGAAGACGTACAGGGACATGGTGGTGGCCGCCGCCGGCGACGAGACGCCGCTCTCGTCCATCTCCGACCGGGCCAGC
TCGTCGTCCGCCGGCACCGGCGGCGACCGGAGCGGCGAGCTCTGGAGGAATTAATCAACGTTTTGCTGTAAATATGCAAA
AGCGAAAGTATTCGTTAAAATTCTGCTCATGTGTTGATGTTGTTTGTGNATTGTGATCGAGCTAATCGCTGACACGATAC
GGTTGGAATGTGATTTTGCCTTCGTTACTTGTCCATCTGGTTTTGTTCATCACGTTCTGGATTTACTATTAGATTAAAAA
ATTTTGGGGGCCATTTGTTATTACCGATGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49855.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis