Browse Element(s) Details


Os.49916.1.S1_at

Description gb:AK119349.1
DB_XREF= gi:37988972
TID=Os.49916.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49916 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-131-E11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-131-E11, full insert sequence.
FL= gb:AK119349.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3988011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39830Os.51953.1.S1_at11/1112+24585973..24588513Cyclin, N-terminal domain containing protein, expressed
LOC_Os12g39840Os.15671.1.A1_at11/1112+24594281..24597403expressed protein
LOC_Os12g39850OsAffx.32104.1.S1_at11/1112+24598941..24600230Helix-loop-helix DNA-binding domain containing protein
LOC_Os12g39860Os.5685.1.S1_at9/1112+24603370..24606245Adenine phosphoribosyltransferase 1, putative, expressed
LOC_Os12g39860OsAffx.26820.1.S1_at1/1112+24603370..24606245Adenine phosphoribosyltransferase 1, putative, expressed
LOC_Os12g39870OsAffx.20039.1.S1_at11/1112+24608161..24611398expressed protein
LOC_Os12g39870OsAffx.32105.1.S1_at11/1112+24608161..24611398expressed protein
LOC_Os12g39880Os.49916.1.S1_at11/1112+24612885..24615723expressed protein
LOC_Os12g39890OsAffx.32106.2.S1_at11/1112+24616310..24619047expressed protein
LOC_Os12g39890OsAffx.32106.2.S1_x_at11/1112+24616310..24619047expressed protein
LOC_Os12g39890OsAffx.32106.1.S1_at9/1112+24616310..24619047expressed protein
LOC_Os12g39900OsAffx.1319.1.S1_at1/1112+24619342..24622359transposon protein, putative, Mariner sub-class
LOC_Os12g39910OsAffx.20040.1.S1_x_at11/1112+24623929..24624704hypothetical protein
LOC_Os12g39920OsAffx.32107.1.S1_at7/1112+24636234..24638070expressed protein
LOC_Os12g39920Os.11758.1.S1_at1/1112+24636234..24638070expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49916.1.S1_at--96--10051Chr12:24615157..24615181 (25 bp)
TAGTTGCATTGCCAGGGTTTTCGGT
LOC_Os12g39880
Os.49916.1.S1_at--424--10351Chr12:24615226..24615250 (25 bp)
TTTTCTGCACTTTTTGGACCCCATT
LOC_Os12g39880
Os.49916.1.S1_at--677--192Chr12:24615316..24615340 (25 bp)
ATTTCGACCAGATAATCACTTGCCG
LOC_Os12g39880
Os.49916.1.S1_at--137--391Chr12:24615330..24615354 (25 bp)
ATCACTTGCCGAGGGATCCGAAATT
LOC_Os12g39880
Os.49916.1.S1_at--208--6891Chr12:24615377..24615401 (25 bp)
GTATATAGCTGTTGTCTGCCCATGC
LOC_Os12g39880
Os.49916.1.S1_at--3--1991Chr12:24615404..24615428 (25 bp)
ACTCCCGCAACATCGGAAGGCGTGA
LOC_Os12g39880
Os.49916.1.S1_at--673--7751Chr12:24615432..24615456 (25 bp)
GGTGATCATGGCGTAGCTGAACAAT
LOC_Os12g39880
Os.49916.1.S1_at--682--8971Chr12:24615449..24615473 (25 bp)
TGAACAATCCAGCAAACCTTCGCAC
LOC_Os12g39880
Os.49916.1.S1_at--566--2751Chr12:24615494..24615518 (25 bp)
AAGACAGACAGAGCGGTCGTCTCCC
LOC_Os12g39880
Os.49916.1.S1_at--74--7811Chr12:24615508..24615532 (25 bp)
GGTCGTCTCCCAGAGAACTTTTATT
LOC_Os12g39880
Os.49916.1.S1_at--1058--111Chr12:24615643..24615667 (25 bp)
ATTATTCCCGTACCTGGACTACTAT
LOC_Os12g39880
Target Sequence 
TAGTTGCATTGCCAGGGTTTTCGGTTTCTTTCGGCCATTTTGGTTTTACCAAAATTCCTGAAATTTCGGTTTTCTGCACT
TTTTGGACCCCATTTTTTGAAATTTTAACATAATTTAGCTGATTTTGACCAAATTCGTAAAAAAAAAGAGAGACCGAAAA
TTTCGACCAGATAATCACTTGCCGAGGGATCCGAAATTTCGAACCGAAATTACAATCAGTGTATATAGCTGTTGTCTGCC
CATGCCAACTCCCGCAACATCGGAAGGCGTGACGAGGTGATCATGGCGTAGCTGAACAATCCAGCAAACCTTCGCACCCA
ACGCCTACTACCACGACAAGACAGACAGAGCGGTCGTCTCCCAGAGAACTTTTATTTTAGTTTTGGGTTTGATTATACAA
TCGGGTTTTAACCGTATGTAGGTTATGTTCTTGATGGTGGTTTAAGATGTTTAACACTATAGGATGGGTTATAGTTCGAT
GTTAGAATTATTCCCGTACCTGGACTACTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49916.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis