Browse Element(s) Details


Os.49925.2.S2_at

Description gb:AK101105.1
DB_XREF= gi:32986314
TID=Os.49925.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49925 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-201-B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033025D11, full insert sequence.
FL= gb:AK101105.1 gb:AK105677.1 gb:AK072901.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0572011/11TPR Domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05690Os.52084.1.S1_at7/115+2808923..2811629expressed protein
LOC_Os05g05700Os.7113.1.S1_at11/115+2812160..2818866Cullin-1, putative, expressed
LOC_Os05g05710Os.22843.1.S1_at11/115+2823712..2829677EF hand family protein, expressed
LOC_Os05g05720Os.49925.2.S1_x_at11/115+2830871..2837288TPR Domain containing protein, expressed
LOC_Os05g05720Os.49925.2.S2_at11/115+2830871..2837288TPR Domain containing protein, expressed
LOC_Os05g05730NANA5+2837436..2837780Glutaredoxin-like family protein
LOC_Os05g05740Os.48588.1.A1_at11/115+2840702..2843698Proline synthetase co-transcribed bacterial homolog protein, putative, expressed
LOC_Os05g05740OsAffx.26746.1.S1_x_at7/115+2840702..2843698Proline synthetase co-transcribed bacterial homolog protein, putative, expressed
LOC_Os05g05740OsAffx.26746.1.S1_at6/115+2840702..2843698Proline synthetase co-transcribed bacterial homolog protein, putative, expressed
LOC_Os05g05750OsAffx.26747.1.S1_at6/115+2845380..2845922hypothetical protein
LOC_Os05g05760Os.53247.1.S1_at11/115+2847042..2848340expressed protein
LOC_Os05g05770OsAffx.14558.1.S1_at8/115+2850753..2851717hypothetical protein
LOC_Os05g05780Os.2916.1.S1_at11/115+2852343..2862799Chromatin remodelling complex ATPase chain, putative, expressed
LOC_Os05g05780Os.22820.1.A1_at1/115+2852343..2862799Chromatin remodelling complex ATPase chain, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007049biological_processcell cycle
GO:0007346biological_processregulation of progression through mitotic cell cycle
GO:0030154biological_processcell differentiation
GO:0048364biological_processroot development
GO:0005680cellular_componentanaphase-promoting complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49925.2.S2_at--65--6071Chr05:2836980..2837004 (25 bp)
GAGTAAGTTTTCTTGCTAACGCGAA
LOC_Os05g05720
Os.49925.2.S2_at--336--6811Chr05:2836986..2837010 (25 bp)
GTTTTCTTGCTAACGCGAAACCTCG
LOC_Os05g05720
Os.49925.2.S2_at--25--9091Chr05:2836993..2837017 (25 bp)
TGCTAACGCGAAACCTCGTCGTAGA
LOC_Os05g05720
Os.49925.2.S2_at--484--2631Chr05:2837004..2837028 (25 bp)
AACCTCGTCGTAGAGTTGCAATGCT
LOC_Os05g05720
Os.49925.2.S2_at--88--1231Chr05:2837017..2837041 (25 bp)
AGTTGCAATGCTCACCGTAGGTTTA
LOC_Os05g05720
Os.49925.2.S2_at--758--611Chr05:2837024..2837048 (25 bp)
ATGCTCACCGTAGGTTTATTTTTCT
LOC_Os05g05720
Os.49925.2.S2_at--1014--6611Chr05:2837033..2837057 (25 bp)
GTAGGTTTATTTTTCTAATGCTGGG
LOC_Os05g05720
Os.49925.2.S2_at--265--6991Chr05:2837130..2837154 (25 bp)
GTACCCAACAGTCCAAATTCCTGGT
LOC_Os05g05720
Os.49925.2.S2_at--745--2471Chr05:2837136..2837160 (25 bp)
AACAGTCCAAATTCCTGGTATCTAG
LOC_Os05g05720
Os.49925.2.S2_at--661--4271Chr05:2837149..2837173 (25 bp)
CCTGGTATCTAGGATGTCTCATTTG
LOC_Os05g05720
Os.49925.2.S2_at--184--6791Chr05:2837250..2837274 (25 bp)
GTTATATATCATGGCGACAAAAAAG
LOC_Os05g05720
Target Sequence 
GAGTAAGTTTTCTTGCTAACGCGAAACCTCGTCGTAGAGTTGCAATGCTCACCGTAGGTTTATTTTTCTAATGCTGGGGA
AATGTGAACTGAACTTGTTGGTTTCNAGTCAAACTTTATTACTACCTCTGTCCTAACATATAGCAACTTAGTACCCAACA
GTCCAAATTCCTGGTATCTAGGATGTCTCATTTGATATTAGGGTGCTATATTTTGAGACGGGGTAGTAGTTAATTTGCTC
TCCATGTATTATTGTTTTTTACATTATTGTGTTATATATCATGGCGACAAAAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49925.2.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis