Browse Element(s) Details


Os.49983.1.S1_at

Description gb:AK119482.1
DB_XREF= gi:37989105
TID=Os.49983.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49983 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-134-C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-134-C02, full insert sequence.
FL= gb:AK119482.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g107305/11Polygalacturonase precursor, putative
LOC_Os07g107001/11Polygalacturonase precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10680OsAffx.28391.1.S1_x_at2/117+5799164..5800891Polygalacturonase precursor, putative
LOC_Os07g10680OsAffx.28393.1.S1_at2/117+5799164..5800891Polygalacturonase precursor, putative
LOC_Os07g10690Os.27504.1.S1_at11/117+5803688..5809674NLI interacting factor, putative, expressed
LOC_Os07g10690Os.49888.1.S1_at10/117+5803688..5809674NLI interacting factor, putative, expressed
LOC_Os07g10690OsAffx.28390.1.S1_at10/117+5803688..5809674NLI interacting factor, putative, expressed
LOC_Os07g10690Os.32108.1.S1_s_at1/117+5803688..5809674NLI interacting factor, putative, expressed
LOC_Os07g10700OsAffx.28391.1.S1_at11/117+5810497..5812217Polygalacturonase precursor, putative
LOC_Os07g10700OsAffx.28391.1.S1_x_at11/117+5810497..5812217Polygalacturonase precursor, putative
LOC_Os07g10700Os.49983.1.S1_at1/117+5810497..5812217Polygalacturonase precursor, putative
LOC_Os07g10700OsAffx.3028.1.S1_at1/117+5810497..5812217Polygalacturonase precursor, putative
LOC_Os07g10710NANA7+5815614..5816825F-box domain containing protein
LOC_Os07g10720Os.4622.1.S1_at11/117+5818028..582007740S ribosomal protein S15a, putative, expressed
LOC_Os07g10730Os.49983.1.S1_at5/117+5821134..5822307Polygalacturonase precursor, putative
LOC_Os07g10730OsAffx.28391.1.S1_x_at3/117+5821134..5822307Polygalacturonase precursor, putative
LOC_Os07g10740OsAffx.28393.1.S1_at11/117+5826719..5828449Polygalacturonase precursor, putative
LOC_Os07g10740OsAffx.28391.1.S1_x_at2/117+5826719..5828449Polygalacturonase precursor, putative
LOC_Os07g10750Os.11575.4.S1_x_at11/117+5832985..5834887transposon protein, putative, Pong sub-class
LOC_Os07g10750Os.11575.2.S1_a_at9/117+5832985..5834887transposon protein, putative, Pong sub-class
LOC_Os07g10750Os.11575.3.S1_x_at8/117+5832985..5834887transposon protein, putative, Pong sub-class
LOC_Os07g10760OsAffx.20858.1.S1_x_at10/117+5835754..5836511hypothetical protein
LOC_Os07g10760OsAffx.20858.4.S1_x_at9/117+5835754..5836511hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0004650molecular_functionpolygalacturonase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49983.1.S1_at--1159--51Chr07:5822126..5822149 (24 bp)
ATTGCAGCAACAGTGTGCCTTGCCG
LOC_Os07g10730
Os.49983.1.S1_at--680--2491NONE
AACAGTGTGCCTTGCCGTGGCATAA
NONE
Os.49983.1.S1_at--559--7072Chr07:5822198..5822222 (25 bp)
GTAATGCCAAGAGCACCTGCCAGAA
LOC_Os07g10730
Os.49983.1.S1_at--840--2271Chr07:5822236..5822260 (25 bp)
AAATCTGGTGTGTCAGTCCATTGCC
LOC_Os07g10730
Os.49983.1.S1_at--251--7271Chr07:5822251..5822275 (25 bp)
GTCCATTGCCCTGTGGTTTCAAAAA
LOC_Os07g10730
Os.49983.1.S1_at--186--8091Chr07:5822283..5822307 (25 bp)
GGAGCTGGTTGGAACATCAGATTAA
LOC_Os07g10730
Os.49983.1.S1_at--836--10491Chr07:5822550..5822574 (25 bp)
TTAACCGTGTGTGAAGCAACACTCG
NONE
Os.49983.1.S1_at--377--5151Chr07:5822565..5822589 (25 bp)
GCAACACTCGGAGTTCTTGTACTGA
NONE
Os.49983.1.S1_at--565--6731Chr07:5822577..5822601 (25 bp)
GTTCTTGTACTGAGTTCTTGTTCTC
NONE
Os.49983.1.S1_at--1014--9571Chr07:5822592..5822616 (25 bp)
TCTTGTTCTCGAAGCCTCACATAAG
NONE
Os.49983.1.S1_at--603--9771Chr07:5822613..5822637 (25 bp)
TAAGTGATCAAAGCCCATTGCGAGC
NONE
Target Sequence 
ATTGCAGCAACAGTGTGCCTTGCCGTGGCATAACCTTGGAGAATGTCAATCTCACTGTCAAGGGAGGTAGCAGTAATGCC
AAGAGCACCTGCCAGAATGCAGAATGGAAGAAATCTGGTGTGTCAGTCCATTGCCCTGTGGTTTCAAAAATTGATCTGGA
GCTGGTTGGAACATCAGATTAAGTGGAGGATGTAGAGTGTCAGATGATCTTTAGAGAAGATTATATGTAGAGTAGGAGGA
TAAATACGTAGCGGAAACTACAACTTTGGTGTAAACTTGAAATCTTAGGAGGGATACATGATGTGTACAGGTATATACTA
GATAGAGAGGCCCTAAAAAATTAACCGTGTGTGAAGCAACACTCGGAGTTCTTGTACTGAGTTCTTGTTCTCGAAGCCTC
ACATAAGTGATCAAAGCCCATTGCGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49983.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis