Browse Element(s) Details


Os.50019.1.S1_at

Description gb:AK063608.1
DB_XREF= gi:32973626
TID=Os.50019.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.50019 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-118-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-118-C12, full insert sequence.
FL= gb:AK063608.1 gb:AK119680.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0408011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04050Os.23253.1.S1_at11/113+1831985..1836891protein kinase family protein, putative, expressed
LOC_Os03g04060Os.1191.1.S1_at11/113+1839540..1840897Basic endochitinase precursor, putative, expressed
LOC_Os03g04070Os.21395.1.S1_at4/113+1841469..1843356No apical meristem protein, expressed
LOC_Os03g04080Os.50019.1.S1_at11/113+1849915..1850610expressed protein
LOC_Os03g04090NANA3+1852155..1852452hypothetical protein
LOC_Os03g04100Os.19401.1.S1_at11/113+1852474..1857551expressed protein
LOC_Os03g04110Os.11983.1.S1_at11/113+1858022..1860820LysM domain containing protein, expressed
LOC_Os03g04120Os.52327.1.S1_at11/113+1861089..1863179AMP-dependent synthetase and ligase family protein, putative, expressed
LOC_Os03g04130Os.27166.1.A1_s_at11/113+1865013..1867742AMP-dependent synthetase and ligase family protein, putative, expressed
LOC_Os03g04140Os.17315.1.S1_at11/113+1871938..1876420serine O-acetyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50019.1.S1_at--313--471Chr03:1850139..1850163 (25 bp)
ATCTCCGAGATGAAGCCGCTGACGC
LOC_Os03g04080
Os.50019.1.S1_at--163--8431Chr03:1850325..1850349 (25 bp)
GGCCAGTCCTACATCCAGTAGTTTG
LOC_Os03g04080
Os.50019.1.S1_at--184--10271Chr03:1850346..1850370 (25 bp)
TTTGTTGTGTGTGTCCGTGCCGTGA
LOC_Os03g04080
Os.50019.1.S1_at--778--1131Chr03:1850385..1850409 (25 bp)
AGTCAGGCAGTTTGGTCCGGAACAA
LOC_Os03g04080
Os.50019.1.S1_at--202--1311Chr03:1850410..1850434 (25 bp)
AGATGTGCATAGGTCGTTCCACGCT
LOC_Os03g04080
Os.50019.1.S1_at--63--6831Chr03:1850452..1850476 (25 bp)
GTTTACTTGCTGTAATTTGGCCCAA
LOC_Os03g04080
Os.50019.1.S1_at--680--1771Chr03:1850496..1850520 (25 bp)
ACCGGAGATCGTTAGTCTTGGCCTA
LOC_Os03g04080
Os.50019.1.S1_at--333--9571Chr03:1850511..1850535 (25 bp)
TCTTGGCCTACTAACTCTTATGGAC
LOC_Os03g04080
Os.50019.1.S1_at--81--9511Chr03:1850526..1850550 (25 bp)
TCTTATGGACCTTGCCAATGGGCTA
LOC_Os03g04080
Os.50019.1.S1_at--448--4831Chr03:1850547..1850571 (25 bp)
GCTAATCTGACCAAGTGCCCATGGA
LOC_Os03g04080
Os.50019.1.S1_at--176--1171Chr03:1850581..1850605 (25 bp)
AGTCACGAGGAACCTCTCTTATCAG
LOC_Os03g04080
Target Sequence 
ATCTCCGAGATGAAGCCGCTGACGCGGGAGGCGTACGGCGGCGGGATGTACGCCAACGAGGGGCGGAGGGACCCGACGCG
GCCGCGCGCCAGCGCCACGCAGAGCGCCGACGGCCCGGAGGAGGCCGCCGTCAGGCCCAAGCACGCGCCGCCGCCGTCCA
CCGGCGACCGCGACCTCGACATCACCGGCCAGTCCTACATCCAGTAGTTTGTTGTGTGTGTCCGTGCCGTGACGGTGTAT
GCGTGTAGTCAGGCAGTTTGGTCCGGAACAAAGATGTGCATAGGTCGTTCCACGCTGTAACGAATAAATGTAAGTTTACT
TGCTGTAATTTGGCCCAATAAGGCTACCGGCCTNCCAACCGGAGATCGTTAGTCTTGGCCTACTAACTCTTATGGACCTT
GCCAATGGGCTAATCTGACCAAGTGCCCATGGATCATAATAAAGTCACGAGGAACCTCTCTTATCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50019.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis