Browse Element(s) Details


Os.50054.2.S1_at

Description gb:AK119784.1
DB_XREF= gi:37989407
TID=Os.50054.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.50054 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-109-C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-173-F05, full insert sequence.
FL= gb:AK119784.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0409010/11No apical meristem protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g04070Os.12277.1.S1_at11/116+1673259..1676407Arginine decarboxylase, putative, expressed
LOC_Os06g04070Os.19800.1.S1_at11/116+1673259..1676407Arginine decarboxylase, putative, expressed
LOC_Os06g04080Os.54484.1.S1_at11/116+1690886..1693052Glycosyl hydrolases family 17 protein, expressed
LOC_Os06g04080Os.54484.2.S1_at11/116+1690886..1693052Glycosyl hydrolases family 17 protein, expressed
LOC_Os06g04090Os.50054.1.S1_x_at11/116+1698408..1701612No apical meristem protein, expressed
LOC_Os06g04090Os.50054.2.S1_at10/116+1698408..1701612No apical meristem protein, expressed
LOC_Os06g04100NANA6+1709906..1712529hypothetical protein
LOC_Os06g04110Os.2741.4.S1_x_at2/116+1714409..1716222retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g04120OsAffx.27450.1.S1_at11/116+1722576..1724393hypothetical protein
LOC_Os06g04130Os.4314.1.S1_at11/116+1724389..1728997Lung seven transmembrane receptor family protein, expressed
LOC_Os06g04130OsAffx.20617.1.A1_x_at1/116+1724389..1728997Lung seven transmembrane receptor family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0009834biological_processsecondary cell wall biosynthesis (sensu Magnoliophyta)
GO:0009901biological_processanther dehiscence
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50054.2.S1_at--793--2331Chr06:1698516..1698540 (25 bp)
AAAGACATTTTTCTAGTGCAGCGAG
LOC_Os06g04090
Os.50054.2.S1_at--6--5691Chr06:1698513..1698537 (25 bp)
GACATTTTTCTAGTGCAGCGAGGTG
LOC_Os06g04090
Os.50054.2.S1_at--222--7331Chr06:1698501..1698525 (25 bp)
GTGCAGCGAGGTGTGATTTCTTTTC
LOC_Os06g04090
Os.50054.2.S1_at--1103--1631Chr06:1698497..1698521 (25 bp)
AGCGAGGTGTGATTTCTTTTCTGAT
LOC_Os06g04090
Os.50054.2.S1_at--795--7471Chr06:1698491..1698515 (25 bp)
GTGTGATTTCTTTTCTGATGATCAT
LOC_Os06g04090
Os.50054.2.S1_at--214--9391Chr06:1698450..1698474 (25 bp)
TCGATCACTGATCACCGTGTGAGTG
LOC_Os06g04090
Os.50054.2.S1_at--985--6431Chr06:1698448..1698472 (25 bp)
GATCACTGATCACCGTGTGAGTGTA
LOC_Os06g04090
Os.50054.2.S1_at--669--4251Chr06:1698436..1698460 (25 bp)
CCGTGTGAGTGTACTAATTATTGTG
LOC_Os06g04090
Os.50054.2.S1_at--736--3131Chr06:1698421..1698445 (25 bp)
AATTATTGTGTGATCGATCGCTCGA
LOC_Os06g04090
Os.50054.2.S1_at--412--10831Chr06:1698416..1698440 (25 bp)
TTGTGTGATCGATCGCTCGATGGAT
LOC_Os06g04090
Os.50054.2.S1_at--207--4051Chr06:1698407..1698431 (25 bp)
CGATCGCTCGATGGATGGATTAATA
NONE
Target Sequence 
AAAGACATTTTTCTAGTGCAGCGAGGTGTGATTTCTTTTCTGATGATCATATCATATATATCATCATCGATCACTGATCA
CCGTGTGAGTGTACTAATTATTGTGTGATCGATCGCTCGATGGATGGATTAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50054.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis