Browse Element(s) Details


Os.50056.1.S1_x_at

Description gb:AK119796.1
DB_XREF= gi:37989419
TID=Os.50056.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50056 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-175-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-175-D06, full insert sequence.
FL= gb:AK119796.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3442011/11transcription factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34374NANA1+19275668..19283464transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34390Os.17159.1.S1_at11/111+19288165..19295852protoheme IX farnesyltransferase family protein, expressed
LOC_Os01g34390Os.49333.1.S1_at1/111+19288165..19295852protoheme IX farnesyltransferase family protein, expressed
LOC_Os01g34400OsAffx.9060.1.S1_at11/111+19299540..19301255transposon protein, putative, Pong sub-class
LOC_Os01g34410Os.41074.1.S1_at3/111+19301812..19303778transposon protein, putative, Pong sub-class
LOC_Os01g34420Os.50056.1.S1_at11/111+19304271..19305166transcription factor, putative, expressed
LOC_Os01g34420Os.50056.1.S1_x_at11/111+19304271..19305166transcription factor, putative, expressed
LOC_Os01g34420OsAffx.23508.1.S1_at1/111+19304271..19305166transcription factor, putative, expressed
LOC_Os01g34420OsAffx.23508.2.S1_at1/111+19304271..19305166transcription factor, putative, expressed
LOC_Os01g34430OsAffx.11314.1.S1_at10/111+19310796..19315354transcription factor, putative
LOC_Os01g34430Os.41072.1.S1_at4/111+19310796..19315354transcription factor, putative
LOC_Os01g34440OsAffx.9058.1.S1_at11/111+19317445..19318362hypothetical protein
LOC_Os01g34440Os.10191.1.S1_at1/111+19317445..19318362hypothetical protein
LOC_Os01g34450Os.36927.1.S1_at11/111+19319632..19321821expressed protein
LOC_Os01g34450OsAffx.29486.5.S1_s_at11/111+19319632..19321821expressed protein
LOC_Os01g34450Os.36927.2.S1_x_at11/111+19319632..19321821expressed protein
LOC_Os01g34450OsAffx.29486.3.S1_at9/111+19319632..19321821expressed protein
LOC_Os01g34450OsAffx.29486.2.S1_x_at4/111+19319632..19321821expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50056.1.S1_x_at--450--8571Chr01:19304978..19305002 (25 bp)
TGGTTGCGCGTGTCCGGAACGCCTA
LOC_Os01g34420
Os.50056.1.S1_x_at--368--9991Chr01:19305001..19305025 (25 bp)
TACCACTTCGAAGGTCAGCGCGCTG
LOC_Os01g34420
Os.50056.1.S1_x_at--937--4571Chr01:19305020..19305044 (25 bp)
GCGCTGAGCGCCACCTGTTTGATGA
LOC_Os01g34420
Os.50056.1.S1_x_at--57--8971Chr01:19305042..19305066 (25 bp)
TGAAATGCCTCGTCTTTTCATTCAC
LOC_Os01g34420
Os.50056.1.S1_x_at--436--4291Chr01:19305049..19305073 (25 bp)
CCTCGTCTTTTCATTCACTTGTAGA
LOC_Os01g34420
Os.50056.1.S1_x_at--404--10331Chr01:19305057..19305081 (25 bp)
TTTCATTCACTTGTAGAGTGGCTGT
LOC_Os01g34420
Os.50056.1.S1_x_at--601--8811Chr01:19305084..19305108 (25 bp)
TGTTGTGTGCTTGTCCTGTTAGAAC
LOC_Os01g34420
Os.50056.1.S1_x_at--120--3871Chr01:19305099..19305123 (25 bp)
CTGTTAGAACAGTTGGCCCGAGTTT
LOC_Os01g34420
Os.50056.1.S1_x_at--922--6591Chr01:19305110..19305134 (25 bp)
GTTGGCCCGAGTTTACTTCATGGAA
LOC_Os01g34420
Os.50056.1.S1_x_at--676--5351Chr01:19305132..19305156 (25 bp)
GAAGATCTAAACAAGCTTGCTCGGT
LOC_Os01g34420
Os.50056.1.S1_x_at--1033--2451Chr01:19305141..19305165 (25 bp)
AACAAGCTTGCTCGGTGGATGCTCA
LOC_Os01g34420
Target Sequence 
TGGTTGCGCGTGTCCGGAACGCCTACCACTTCGAAGGTCAGCGCGCTGAGCGCCACCTGTTTGATGAAATGCCTCGTCTT
TTCATTCACTTGTAGAGTGGCTGTTGTGTTGTGTGCTTGTCCTGTTAGAACAGTTGGCCCGAGTTTACTTCATGGAAGAT
CTAAACAAGCTTGCTCGGTGGATGCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50056.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis