Browse Element(s) Details


Os.50120.1.S1_at

Description gb:AK119907.1
DB_XREF= gi:37989530
TID=Os.50120.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50120 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-182-F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-182-F08, full insert sequence.
FL= gb:AK119907.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g128207/11expressed protein
LOC_Os02g036002/11DnaJ domain containing protein, expressed
LOC_Os11g374601/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g095601/11hypothetical protein
LOC_Os05g185301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g12760NANA4+7037021..7042985retrotransposon protein, putative, unclassified
LOC_Os04g12770Os.28943.1.S1_x_at3/114+7043607..7047000retrotransposon protein, putative, unclassified
LOC_Os04g12770OsAffx.29322.1.S1_x_at1/114+7043607..7047000retrotransposon protein, putative, unclassified
LOC_Os04g12780NANA4+7048782..7050014retrotransposon protein, putative, unclassified
LOC_Os04g12790NANA4+7054906..7055352transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g12800OsAffx.26007.1.S1_at11/114+7057050..7057484hypothetical protein
LOC_Os04g12809NANA4+7059884..7060846NA
LOC_Os04g12820Os.50120.1.S1_at7/114+7061639..7063359expressed protein
LOC_Os04g12820Os.12235.2.S1_x_at4/114+7061639..7063359expressed protein
LOC_Os04g12830OsAffx.26008.1.S1_at11/114+7064772..7067951expressed protein
LOC_Os04g12840OsAffx.13793.1.S1_at11/114+7070066..7072603expressed protein
LOC_Os04g12850OsAffx.26009.1.S1_at11/114+7080499..7080813hypothetical protein
LOC_Os04g12850OsAffx.26009.1.S1_x_at11/114+7080499..7080813hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50120.1.S1_at--529--31Chr01:31175684..31175708 (25 bp)
ATTGACGCCTAACACCAACGTCAGA
NONE
Os.50120.1.S1_at--320--4171Chr01:31175679..31175703 (25 bp)
CGCCTAACACCAACGTCAGAGAAGT
NONE
Os.50120.1.S1_at--288--56716Chr12:67391..67416 (24 bp)
GACATGTGGGCCCTATATTATTTTA
NONE
Os.50120.1.S1_at--184--797Chr10:16373875..16373898 (24 bp)
ATGTGGGCCCTATATTATTTTATTT
NONE
Os.50120.1.S1_at--349--104114Chr12:2479521..2479542 (22 bp)
TTATTTTGCTGATTGGATTTCCACG
NONE
Os.50120.1.S1_at--82--88310Chr12:18469575..18469599 (25 bp)
TGATTGGATTTCCACGTCGACGCCA
NONE
Os.50120.1.S1_at--169--4032Chr04:7061676..7061794 (25 bp)
CGTTCCGGATTGAGTCAGGGTAATT
LOC_Os04g12820
Os.50120.1.S1_at--524--65315Chr10:14059234..14059261 (25 bp)
GATTGAGTCAGGGTAATTCGTCCGG
NONE
Os.50120.1.S1_at--1064--68511Chr12:1349058..1349082 (25 bp)
GTTTGAGGTTTAATATGTCTGGTTT
NONE
Os.50120.1.S1_at--996--7592Chr04:7061652..7061714 (25 bp)
GGGCAATTCATACTGTCGTAAAAGT
LOC_Os04g12820
Os.50120.1.S1_at--1123--2991Chr01:31175350..31175374 (25 bp)
AATGAGAGAGTATGCGTTATGCCGC
NONE
Target Sequence 
ATTGACGCCTAACACCAACGTCAGAGAAGTGACAGAGAACAAGGGGTTAATATGACATGTGGGCCCTATATTATTTTATT
TTATTTTATTTTGCTGATTGGATTTCCACGTCGACGCCACGTGTATGCCACGTAGAACCAAAACCGTTCCGGATTGAGTC
AGGGTAATTCGTCCGGTTTCAATAGTTTGAGGTTTAATATGTCTGGTTTTGTGGTTCGGGGGGGTGGAGGGGGGGGCAAT
TCATACTGTCGTAAAAGTTCAGGGGTGTAATTCGTATTTTTTTCTTTATAATACTAAGATGTGTTATATAACATAATAGA
TTTGTTTTTTATGGAATGAGAGAGTATGCGTTATGCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50120.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis