Browse Element(s) Details


Os.50124.1.S1_at

Description gb:AK119912.1
DB_XREF= gi:37989535
TID=Os.50124.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50124 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-183-D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-183-D01, full insert sequence.
FL= gb:AK119912.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2265011/11xylulose kinase like protein, putative, expressed
LOC_Os02g540001/11mRNA capping enzyme family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g22640Os.16249.2.S1_s_at11/117+12745901..12758982calcium-dependent lipid-binding protein, putative, expressed
LOC_Os07g22640Os.16249.1.S1_a_at11/117+12745901..12758982calcium-dependent lipid-binding protein, putative, expressed
LOC_Os07g22640Os.16249.1.S1_s_at11/117+12745901..12758982calcium-dependent lipid-binding protein, putative, expressed
LOC_Os07g22640Os.16249.2.S1_x_at11/117+12745901..12758982calcium-dependent lipid-binding protein, putative, expressed
LOC_Os07g22650Os.50124.1.S1_at11/117+12762046..12765019xylulose kinase like protein, putative, expressed
LOC_Os07g22650Os.48012.1.S1_x_at8/117+12762046..12765019xylulose kinase like protein, putative, expressed
LOC_Os07g22660OsAffx.28541.2.S1_s_at11/117+12767439..12769147hypothetical protein
LOC_Os07g22670Os.31679.1.S1_at11/117+12770549..12772592mTERF family protein, expressed
LOC_Os07g22680Os.32997.1.S1_at11/117+12775367..12776343Skp1 family, dimerisation domain containing protein, expressed
LOC_Os07g22690OsAffx.28542.1.S1_at11/117+12779809..12780135hypothetical protein
LOC_Os07g22700Os.17328.1.S1_at11/117+12782277..12788679mitochondrial import inner membrane translocase subunit TIM44, putative, expressed
LOC_Os07g22700Os.17328.2.S1_x_at10/117+12782277..12788679mitochondrial import inner membrane translocase subunit TIM44, putative, expressed
LOC_Os07g22700Os.52782.1.S1_at1/117+12782277..12788679mitochondrial import inner membrane translocase subunit TIM44, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006370biological_processmRNA capping
GO:0005737cellular_componentcytoplasm
GO:0003824molecular_functioncatalytic activity
GO:0004856molecular_functionxylulokinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50124.1.S1_at--748--5691Chr07:12764451..12764475 (25 bp)
GACTTAGATGTGTGTGGATGCATGT
LOC_Os07g22650
Os.50124.1.S1_at--668--8631Chr07:12764479..12764503 (25 bp)
TGGGCTGTGGGACATATCAAACTTC
LOC_Os07g22650
Os.50124.1.S1_at--108--7611Chr07:12764487..12764511 (25 bp)
GGGACATATCAAACTTCGGGAATTC
LOC_Os07g22650
Os.50124.1.S1_at--472--9411Chr07:12764502..12764526 (25 bp)
TCGGGAATTCGTTAGGCCACCCCAT
LOC_Os07g22650
Os.50124.1.S1_at--887--1791Chr07:12764520..12764544 (25 bp)
ACCCCATGCATGCTCTTTTCTTTTT
LOC_Os07g22650
Os.50124.1.S1_at--1042--10311Chr07:12764543..12764567 (25 bp)
TTTTAATCAGGCCAACTAAGTTGTC
LOC_Os07g22650
Os.50124.1.S1_at--328--8452Chr07:12764552..12764576 (25 bp)
GGCCAACTAAGTTGTCGAACAATAT
LOC_Os07g22650
Os.50124.1.S1_at--1091--5491Chr07:12764568..12764592 (25 bp)
GAACAATATTATCGAACTACGGTTG
LOC_Os07g22650
Os.50124.1.S1_at--612--12Chr07:12764578..12764602 (25 bp)
ATCGAACTACGGTTGTTTGATAGGG
LOC_Os07g22650
Os.50124.1.S1_at--131--1411Chr07:12764681..12764705 (25 bp)
AAATTTGGTATGTGGACGAACGGCA
LOC_Os07g22650
Os.50124.1.S1_at--614--751Chr07:12764993..12765017 (25 bp)
ATGTACTTGCATTGTTTCTAAATAT
LOC_Os07g22650
Target Sequence 
GACTTAGATGTGTGTGGATGCATGTGAATGGGCTGTGGGACATATCAAACTTCGGGAATTCGTTAGGCCACCCCATGCAT
GCTCTTTTCTTTTTTTAATCAGGCCAACTAAGTTGTCGAACAATATTATCGAACTACGGTTGTTTGATAGGGGCTAAATT
TGTGATTTTTATCAACCAATATTTATTTTTTATAATTTTCCATTAAAATTATATTATTTCTAAAAAAATGAAATTTGGTA
TGTGGACGAACGGCAAGCAGGCAAAGGGGTACAATCTGTTGAAGGAGCTCGGCGCGAGCATGGTGGAGGAGGTTTTGACG
GCGGGTGGAGGAGCTCGGAACGATAAGTGGACGGCGATAAGGGGAAGGGTGCTTGGCGTTCCGGTGAGAAAGGCGGAGCA
GACGGAGGCGGCCTACGGGGCTGCACTGCTAGCACTCAAGGGTGCTAATACTACGCACTAGCGCTCTAATTTAGCAAAAT
ATATGTACATATACAGTTTTTTAATGATATATTTGTGTATGCGTTGCAATCGCAAACTTATAATGTACTTGCATTGTTTC
TAAATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50124.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis