Browse Element(s) Details


Os.50196.2.S1_at

Description gb:AK120031.1
DB_XREF= gi:37989654
TID=Os.50196.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50196 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033121L24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-186-D08, full insert sequence.
FL= gb:AK120031.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g182701/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18250OsAffx.15843.1.S1_x_at2/111+10231711..10232801hypothetical protein
LOC_Os01g18260Os.47463.1.S1_x_at6/111+10244863..10248561transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g18260Os.14491.2.S1_x_at5/111+10244863..10248561transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g18270Os.27037.1.A1_at1/111+10251604..10257390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g18270OsAffx.8160.1.S1_x_at1/111+10251604..10257390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g18270Os.50196.2.S1_at1/111+10251604..10257390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g18280OsAffx.31543.1.S1_x_at11/111+10259724..10264740SNF7 family protein, expressed
LOC_Os01g18280Os.29809.1.S1_at10/111+10259724..10264740SNF7 family protein, expressed
LOC_Os01g18280Os.29809.2.S1_x_at10/111+10259724..10264740SNF7 family protein, expressed
LOC_Os01g18280Os.29809.2.S1_at9/111+10259724..10264740SNF7 family protein, expressed
LOC_Os01g18290Os.27705.1.S1_at11/111+10267935..10271184Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g18290Os.27705.1.S1_a_at11/111+10267935..10271184Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g18290Os.27705.3.S1_at2/111+10267935..10271184Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g18300OsAffx.22253.2.S1_at11/111+10280313..10280699hypothetical protein
LOC_Os01g18300OsAffx.22253.2.S1_s_at11/111+10280313..10280699hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50196.2.S1_at--161--3591NONE
CATTTGTTGCGGGCACACTGGCGCG
NONE
Os.50196.2.S1_at--109--6071Chr02:22857632..22857656 (25 bp)
GAGTTCCTTCGCGGGATCGACGAGC
NONE
Os.50196.2.S1_at--602--9371Chr02:22857669..22857693 (25 bp)
TCGAGCTCCTGCACGCGGGATATAC
NONE
Os.50196.2.S1_at--273--9271Chr02:22857675..22857699 (25 bp)
TCCTGCACGCGGGATATACGAGCCA
NONE
Os.50196.2.S1_at--1140--9011Chr02:22857678..22857702 (25 bp)
TGCACGCGGGATATACGAGCCACCG
NONE
Os.50196.2.S1_at--442--3971Chr02:22857684..22857708 (25 bp)
CGGGATATACGAGCCACCGCTGCGT
NONE
Os.50196.2.S1_at--357--6491Chr02:22857687..22857711 (25 bp)
GATATACGAGCCACCGCTGCGTCCT
NONE
Os.50196.2.S1_at--155--371Chr02:22857851..22857875 (25 bp)
ATAATAGAGTGGTGACTGGACTGCC
NONE
Os.50196.2.S1_at--212--3091Chr02:22857853..22857877 (25 bp)
AATAGAGTGGTGACTGGACTGCCAC
NONE
Os.50196.2.S1_at--84--32910Chr09:16739085..16739105 (21 bp)
CGTAGATTGGGTCGAGGAGGGTAAT
NONE
Os.50196.2.S1_at--331--6231Chr02:22857958..22857982 (25 bp)
GATGTTCGGTTTTATGGTTTAGAGG
NONE
Target Sequence 
CATTTGTTGCGGGCACACTGGCGCGGGGTGACGGCGACAGACGGCGCGCGAGCGGGGCTCGAGGCGACGGCGACGACGGA
CGACGGCGCGCGGCGCAGGCGGGGCTCGAGGGGAGATGGCGACGGCGCGCGGCGCGAGTGATGGCGATGGCGACCGCCCC
TCCTCGAGTTCCTTCGCGGGATCGACGAGCCGCCGAGCAAGCTCGAGCTCCTGCACGCGGGATATACGAGCCACCGCTGC
GTCCTCCCCGCGCTCCGCCACCGCCCGCACACCGCCGCCACCACGTCCTCCCCCACCGCCGCCGACCCGTTTGAGAGAGA
GAGGAAGAGTGAGAGAGAGAAGAGAGAATGAGGAGATGACAGGTGGGTCCCACATTTTTTTTTTATAATAGAGTGGTGAC
TGGACTGCCACGCGTACGCTACGTAGACCAAAACCACCGTAGATTGGGTCGAGGAGGGTAATTCATCCGGTTTGCATAGT
TGGGGGTAAAGGATGTTCGGTTTTATGGTTTAGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50196.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis