Browse Element(s) Details

Os.50255.1.S1_at

Description

gb:AK120346.1
DB_XREF= gi:37989969
TID=Os.50255.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50255 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013063M12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013063M12, full insert sequence.
FL= gb:AK120346.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g25500	6/11	retrotransposon protein, putative, unclassified
LOC_Os01g36020	3/11	retrotransposon protein, putative, unclassified
LOC_Os10g42480	3/11	retrotransposon protein, putative, unclassified
LOC_Os06g12720	3/11	retrotransposon protein, putative, unclassified
LOC_Os09g10790	3/11	retrotransposon protein, putative, unclassified
LOC_Os11g29560	3/11	retrotransposon protein, putative, unclassified

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g25439	Os.12008.1.S1_at	11/11	6	+	14879266..14891857	NmrA-like family protein, expressed
LOC_Os06g25439	OsAffx.23283.1.S1_at	1/11	6	+	14879266..14891857	NmrA-like family protein, expressed
LOC_Os06g25439	OsAffx.21209.1.S1_at	1/11	6	+	14879266..14891857	NmrA-like family protein, expressed
LOC_Os06g25460	Os.12008.3.S1_at	4/11	6	+	14892069..14892284	hypothetical protein
LOC_Os06g25470	Os.27790.1.A1_at	4/11	6	+	14894989..14895649	hypothetical protein
LOC_Os06g25480	NA	NA	6	+	14898156..14901071	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g25490	NA	NA	6	+	14901564..14905195	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g25500	OsAffx.4936.1.S1_at	10/11	6	+	14905525..14914483	retrotransposon protein, putative, unclassified
LOC_Os06g25500	Os.50255.1.S1_at	6/11	6	+	14905525..14914483	retrotransposon protein, putative, unclassified
LOC_Os06g25500	Os.27790.2.A1_x_at	4/11	6	+	14905525..14914483	retrotransposon protein, putative, unclassified
LOC_Os06g25500	OsAffx.20354.1.S1_at	2/11	6	+	14905525..14914483	retrotransposon protein, putative, unclassified
LOC_Os06g25500	Os.26561.1.S1_at	2/11	6	+	14905525..14914483	retrotransposon protein, putative, unclassified
LOC_Os06g25500	Os.46995.1.S1_x_at	1/11	6	+	14905525..14914483	retrotransposon protein, putative, unclassified
LOC_Os06g25500	Os.49405.2.S1_x_at	1/11	6	+	14905525..14914483	retrotransposon protein, putative, unclassified
LOC_Os06g25510	NA	NA	6	+	14917278..14917625	hypothetical protein
LOC_Os06g25520	OsAffx.26476.3.S1_at	10/11	6	+	14921637..14925142	hypothetical protein
LOC_Os06g25520	Os.41248.5.S1_x_at	5/11	6	+	14921637..14925142	hypothetical protein
LOC_Os06g25520	Os.41248.2.A1_at	4/11	6	+	14921637..14925142	hypothetical protein
LOC_Os06g25520	Os.23964.2.S1_x_at	1/11	6	+	14921637..14925142	hypothetical protein
LOC_Os06g25530	OsAffx.27822.1.S1_x_at	11/11	6	+	14929151..14931307	expressed protein
LOC_Os06g25530	OsAffx.27822.1.S1_at	10/11	6	+	14929151..14931307	expressed protein
LOC_Os06g25540	OsAffx.27823.2.S1_at	11/11	6	+	14932982..14936275	hypothetical protein
LOC_Os06g25550	OsAffx.27823.1.S1_at	2/11	6	+	14936393..14940601	retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.50255.1.S1_at--618--421	1	NONE	CCCCAATATTTCAAGCGATGTTCCT	NONE
Os.50255.1.S1_at--75--439	1	NONE	CCAATATTTCAAGCGATGTTCCTCA	NONE
Os.50255.1.S1_at--864--311	5	Chr11:16649469..16649488 (20 bp)	AATATTTCAAGCGATGTTCCTCAAT	LOC_Os11g29560
Os.50255.1.S1_at--421--23	5	Chr11:16649469..16649489 (21 bp)	ATATTTCAAGCGATGTTCCTCAATA	LOC_Os11g29560
Os.50255.1.S1_at--224--1021	5	Chr11:16649469..16649490 (22 bp)	TATTTCAAGCGATGTTCCTCAATAA	LOC_Os11g29560
Os.50255.1.S1_at--583--43	1	Chr06:14905556..14905580 (25 bp)	ATCTTCGACCGACTAGTCTTGATAT	LOC_Os06g25500
Os.50255.1.S1_at--684--957	1	Chr06:14905555..14905579 (25 bp)	TCTTCGACCGACTAGTCTTGATATT	LOC_Os06g25500
Os.50255.1.S1_at--533--1063	1	Chr06:14905553..14905577 (25 bp)	TTCGACCGACTAGTCTTGATATTTC	LOC_Os06g25500
Os.50255.1.S1_at--264--583	1	Chr06:14905550..14905574 (25 bp)	GACCGACTAGTCTTGATATTTCTGA	LOC_Os06g25500
Os.50255.1.S1_at--501--179	1	Chr06:14905549..14905573 (25 bp)	ACCGACTAGTCTTGATATTTCTGAT	LOC_Os06g25500
Os.50255.1.S1_at--1094--421	1	Chr06:14905548..14905572 (25 bp)	CCGACTAGTCTTGATATTTCTGATG	LOC_Os06g25500

Target Sequence

CCCCAATATTTCAAGCGATGTTCCTCAATAACAACGGCCCTAGTGCACTTGATGCTTCTGAAATTTTCGACAAGCTGAGA
GTTGCTCCGGATATATATTTCAAGAACATCAAAGAAGCTGGAAGTATGGGAGCAAGCATGGCATTGGCGATGACTAAATC
CCTTTATCCGAGAGTTGATATTGACGCCATTGATGGCTTTGCAGACGGGACGAGCGAACAAGCTGCTCTTGACCTCATCA
GTAATGCGCAGAAAGCGGCTGACAAAATTGCTGCTGATGTAGTTGAGAGATTTCAGGACACCGATCTTCGACCGACTAGT
CTTGATATTTCTGATG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis