Browse Element(s) Details


Os.50261.1.S1_at

Description gb:AK065584.1
DB_XREF= gi:32975602
TID=Os.50261.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50261 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013033A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013033A03, full insert sequence.
FL= gb:AK065584.1 gb:AK120403.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1515011/11Leucyl-tRNA synthetase, cytoplasmic, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g15090NANA5+8545153..8549384retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g15100OsAffx.31646.2.S1_at11/115+8550052..8551403hypothetical protein
LOC_Os05g15110Os.10731.1.A1_a_at11/115+8553463..8556733hypothetical protein
LOC_Os05g15110Os.46610.1.S1_x_at4/115+8553463..8556733hypothetical protein
LOC_Os05g15110Os.47999.2.A1_x_at1/115+8553463..8556733hypothetical protein
LOC_Os05g15110OsAffx.25778.1.S1_at1/115+8553463..8556733hypothetical protein
LOC_Os05g15110Os.38764.1.S1_x_at1/115+8553463..8556733hypothetical protein
LOC_Os05g15110OsAffx.25778.1.S1_x_at1/115+8553463..8556733hypothetical protein
LOC_Os05g15110OsAffx.20877.1.S1_at1/115+8553463..8556733hypothetical protein
LOC_Os05g15120OsAffx.26903.1.S1_at11/115+8559715..8560026expressed protein
LOC_Os05g15130Os.20602.2.S1_x_at11/115+8560824..8563004hAT family dimerisation domain containing protein
LOC_Os05g15140Os.21083.1.S1_at11/115+8563863..8568769expressed protein
LOC_Os05g15150Os.50261.1.S1_at11/115+8570230..8576318Leucyl-tRNA synthetase, cytoplasmic, putative, expressed
LOC_Os05g15150Os.50261.1.S2_at10/115+8570230..8576318Leucyl-tRNA synthetase, cytoplasmic, putative, expressed
LOC_Os05g15160Os.48609.1.S1_s_at11/115+8579866..8589021Triose phosphate/phosphate translocator, chloroplast precursor, putative, expressed
LOC_Os05g15160OsAffx.23696.1.S1_x_at1/115+8579866..8589021Triose phosphate/phosphate translocator, chloroplast precursor, putative, expressed
LOC_Os05g15160OsAffx.988.1.S1_at1/115+8579866..8589021Triose phosphate/phosphate translocator, chloroplast precursor, putative, expressed
LOC_Os05g15170NANA5+8592558..8593471Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g15180Os.55287.1.S1_at11/115+8595804..8597787expressed protein
LOC_Os05g15190OsAffx.26904.1.S1_at9/115+8598996..8602595hypothetical protein
LOC_Os05g15190OsAffx.26904.1.S1_x_at9/115+8598996..8602595hypothetical protein
LOC_Os05g15190OsAffx.29316.1.S1_x_at2/115+8598996..8602595hypothetical protein
LOC_Os05g15190OsAffx.14776.1.S1_at1/115+8598996..8602595hypothetical protein
LOC_Os05g15190OsAffx.20927.2.S1_at1/115+8598996..8602595hypothetical protein
LOC_Os05g15190OsAffx.14776.1.S1_x_at1/115+8598996..8602595hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006418biological_processtRNA aminoacylation for protein translation
GO:0004812molecular_functionaminoacyl-tRNA ligase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50261.1.S1_at--836--6311Chr05:8572602..8572626 (25 bp)
GATGAAGGTTATTCCGCCATTTCCA
LOC_Os05g15150
Os.50261.1.S1_at--563--191Chr05:8572620..8572644 (25 bp)
ATTTCCACCCAAGTTGATGGTCCTG
LOC_Os05g15150
Os.50261.1.S1_at--923--2291Chr05:8572653..8572677 (25 bp)
AAATGTGTATTTGGCCGCAGCAACA
LOC_Os05g15150
Os.50261.1.S1_at--1016--7111Chr05:8572736..8572760 (25 bp)
GTCAGTAGACCCCAACGATGTTTTG
LOC_Os05g15150
Os.50261.1.S1_at--995--731Chr05:8572753..8572777 (25 bp)
ATGTTTTGCTAATGTCCAGTACCCC
LOC_Os05g15150
Os.50261.1.S1_at--516--10031Chr05:8572817..8572841 (25 bp)
TAGACCCCAGTGACATCCTTGATTG
LOC_Os05g15150
Os.50261.1.S1_at--388--111Chr05:8572857..8572881 (25 bp)
ATTCTATACTAGTGGTACCTCATGG
LOC_Os05g15150
Os.50261.1.S1_at--144--7051Chr05:8572898..8572922 (25 bp)
GTAAAATTGCTCTCCATCAAAGCTC
LOC_Os05g15150
Os.50261.1.S1_at--1028--6391Chr05:8573039..8573063 (25 bp)
GATCGGAAGACACTACTCCACAAAT
LOC_Os05g15150
Os.50261.1.S1_at--230--2252Chr10:4127680..4127704 (25 bp)
AAATTCCCTGGTTGCATCATCATAT
NONE
Os.50261.1.S1_at--235--231Chr05:8573081..8573105 (25 bp)
ATATTCCTCGTTGTATTGCATCGGC
LOC_Os05g15150
Target Sequence 
GATGAAGGTTATTCCGCCATTTCCACCCAAGTTGATGGTCCTGGAAGGCAGAAATGTGTATTTGGCCGCAGCAACACTCA
GACCTGAGACAATATATGGTCAAACCGGGGGCGAAGCTACAGGTAATCATCGGGGTCAGTAGACCCCAACGATGTTTTGC
TAATGTCCAGTACCCCTCTTATTTTACCAGCTATGCCCCCAATGAAGAGCTAAACTAGACCCCAGTGACATCCTTGATTG
TTCCATCAAAGAGCAATTCTATACTAGTGGTACCTCATGGTACCTCCTCAAGAACCGTAAAATTGCTCTCCATCAAAGCT
CAACTGGTTACTATAGGAACGAGATACTAGCNAGCAGCAAATAGAAAATGAACTAGCAGTTATGATTATACAATGGCCCA
ATATGCATATACGATTGATATTTGAGCCCATAAATAAGATCGGAAGACACTACTCCACAAATTCCCTGGTTGCATCATCA
TATTCCTCGTTGTATTGCATCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50261.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis