Browse Element(s) Details


Os.50261.1.S2_at

Description gb:AK120403.1
DB_XREF= gi:37990026
TID=Os.50261.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50261 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013033A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013088K21, full insert sequence.
FL= gb:AK065584.1 gb:AK120403.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1515010/11Leucyl-tRNA synthetase, cytoplasmic, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g15090NANA5+8545153..8549384retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g15100OsAffx.31646.2.S1_at11/115+8550052..8551403hypothetical protein
LOC_Os05g15110Os.10731.1.A1_a_at11/115+8553463..8556733hypothetical protein
LOC_Os05g15110Os.46610.1.S1_x_at4/115+8553463..8556733hypothetical protein
LOC_Os05g15110Os.47999.2.A1_x_at1/115+8553463..8556733hypothetical protein
LOC_Os05g15110OsAffx.25778.1.S1_at1/115+8553463..8556733hypothetical protein
LOC_Os05g15110Os.38764.1.S1_x_at1/115+8553463..8556733hypothetical protein
LOC_Os05g15110OsAffx.25778.1.S1_x_at1/115+8553463..8556733hypothetical protein
LOC_Os05g15110OsAffx.20877.1.S1_at1/115+8553463..8556733hypothetical protein
LOC_Os05g15120OsAffx.26903.1.S1_at11/115+8559715..8560026expressed protein
LOC_Os05g15130Os.20602.2.S1_x_at11/115+8560824..8563004hAT family dimerisation domain containing protein
LOC_Os05g15140Os.21083.1.S1_at11/115+8563863..8568769expressed protein
LOC_Os05g15150Os.50261.1.S1_at11/115+8570230..8576318Leucyl-tRNA synthetase, cytoplasmic, putative, expressed
LOC_Os05g15150Os.50261.1.S2_at10/115+8570230..8576318Leucyl-tRNA synthetase, cytoplasmic, putative, expressed
LOC_Os05g15160Os.48609.1.S1_s_at11/115+8579866..8589021Triose phosphate/phosphate translocator, chloroplast precursor, putative, expressed
LOC_Os05g15160OsAffx.23696.1.S1_x_at1/115+8579866..8589021Triose phosphate/phosphate translocator, chloroplast precursor, putative, expressed
LOC_Os05g15160OsAffx.988.1.S1_at1/115+8579866..8589021Triose phosphate/phosphate translocator, chloroplast precursor, putative, expressed
LOC_Os05g15170NANA5+8592558..8593471Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g15180Os.55287.1.S1_at11/115+8595804..8597787expressed protein
LOC_Os05g15190OsAffx.26904.1.S1_at9/115+8598996..8602595hypothetical protein
LOC_Os05g15190OsAffx.26904.1.S1_x_at9/115+8598996..8602595hypothetical protein
LOC_Os05g15190OsAffx.29316.1.S1_x_at2/115+8598996..8602595hypothetical protein
LOC_Os05g15190OsAffx.14776.1.S1_at1/115+8598996..8602595hypothetical protein
LOC_Os05g15190OsAffx.20927.2.S1_at1/115+8598996..8602595hypothetical protein
LOC_Os05g15190OsAffx.14776.1.S1_x_at1/115+8598996..8602595hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006418biological_processtRNA aminoacylation for protein translation
GO:0004812molecular_functionaminoacyl-tRNA ligase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50261.1.S2_at--290--10331Chr05:8575773..8575797 (25 bp)
TTTCAGGCCCTGTAACCAAATCTTC
LOC_Os05g15150
Os.50261.1.S2_at--476--5651Chr05:8575846..8575870 (25 bp)
GACAGTTGGGTCTTAATCACATAGA
LOC_Os05g15150
Os.50261.1.S2_at--998--10811Chr05:8575875..8575899 (25 bp)
TTGTCATCCTCAGATCCTCTGATGA
LOC_Os05g15150
Os.50261.1.S2_at--751--1371Chr05:8575913..8575937 (25 bp)
AGAGCTGGTTCATATGCTTCCGTGC
LOC_Os05g15150
Os.50261.1.S2_at--952--7311Chr05:8575934..8575958 (25 bp)
GTGCTCAGGAAAAATCCACCTTCTC
LOC_Os05g15150
Os.50261.1.S2_at--645--3791Chr05:8575956..8575980 (25 bp)
CTCCTGGAAACCCTATTGCAATATT
LOC_Os05g15150
Os.50261.1.S2_at--771--9671Chr05:8576018..8576042 (25 bp)
TCACTCACTTGGTTTCGGTAATAAC
LOC_Os05g15150
Os.50261.1.S2_at--160--351Chr05:8576038..8576062 (25 bp)
ATAACAGAACACTCAGGTTGCTCCT
LOC_Os05g15150
Os.50261.1.S2_at--675--1011Chr05:8576052..8576076 (25 bp)
AGGTTGCTCCTAACTTGTCTTATGC
LOC_Os05g15150
Os.50261.1.S2_at--316--1271Chr05:8576077..8576101 (25 bp)
AGATACCACTCATGCTGCCTTTCAA
LOC_Os05g15150
Os.50261.1.S2_at--677--751NONE
ATGTACTGCTAATCATTGCTTCTCC
NONE
Target Sequence 
TTTCAGGCCCTGTAACCAAATCTTCCTTTTGGTGAAATGGAGATTCTTGAAGCGAACAAGGAACAGATCAAAAGACAGTT
GGGTCTTAATCACATAGAGATATTGTCATCCTCAGATCCTCTGATGAGGCTGGTGCAAACAGAGCTGGTTCATATGCTTC
CGTGCTCAGGAAAAATCCACCTTCTCCTGGAAACCCTATTGCAATATTCTTAAGTAAACTGGAGTTCCAGAGTCAAACTT
GAAAATCACTCACTTGGTTTCGGTAATAACAGAACACTCAGGTTGCTCCTAACTTGTCTTATGCAGATACCACTCATGCT
GCCTTTCAAACAAATAGTTTGTTGTGTATAAAATTTGTCTTACAGTTTAGAAAGCACAAACTGTATATGAACCTCGTATA
GAAATAAATCATTGTCTGAACATTGTACAGAAATGAACCTTGTAAATAAGTGTCATTCTATCTGAAATTTGTAAAGGAAT
GAACCTTTGTTATGTAGACTTTGTTTTTAGTTGTATGTAGTATGTACTGCTAATCATTGCTTCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50261.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis