Browse Element(s) Details


Os.50311.1.S1_at

Description gb:AK120652.1
DB_XREF= gi:37990275
TID=Os.50311.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.50311 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013157E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013157E03, full insert sequence.
FL= gb:AK120652.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3833010/11Lipoic acid synthetase, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38270Os.53539.1.S1_at11/114+22554395..22559385expressed protein
LOC_Os04g38274NANA4+22560053..22560482hypothetical protein
LOC_Os04g38280NANA4+22564337..22565046hypothetical protein
LOC_Os04g38290Os.7262.1.S2_at11/114+22565730..22572172expressed protein
LOC_Os04g38290Os.7262.1.S1_at11/114+22565730..22572172expressed protein
LOC_Os04g38300OsAffx.14186.1.S1_at10/114+22573379..22574840hypothetical protein
LOC_Os04g38300OsAffx.26371.1.S1_at2/114+22573379..22574840hypothetical protein
LOC_Os04g38310Os.9424.1.S1_at11/114+22576099..22579702expressed protein
LOC_Os04g38310OsAffx.14187.1.S1_at11/114+22576099..22579702expressed protein
LOC_Os04g38320NANA4+22581616..22582293expressed protein
LOC_Os04g38330Os.50311.1.S1_at10/114+22583655..22586947Lipoic acid synthetase, mitochondrial precursor, putative, expressed
LOC_Os04g38340Os.22690.2.S1_x_at10/114+22587642..22591871Serologically defined breast cancer antigen NY-BR-84 homolog, putative, expressed
LOC_Os04g38350OsAffx.14188.1.S1_at9/114+22594546..22595372hypothetical protein
LOC_Os04g38360OsAffx.14189.1.S1_x_at11/114+22601957..22602645wound/stress protein, putative, expressed
LOC_Os04g38360Os.23121.1.A1_at7/114+22601957..22602645wound/stress protein, putative, expressed
LOC_Os04g38370OsAffx.14189.1.S1_x_at1/114+22603195..22603853dehydration stress-induced protein, putative
LOC_Os04g38380OsAffx.14190.1.S1_at10/114+22606636..22607525expressed protein
LOC_Os04g38390Os.5446.1.S1_at11/114+22610244..22611312wound/stress protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006546biological_processglycine catabolism
GO:0009105biological_processlipoic acid biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
GO:0017140molecular_functionlipoic acid synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50311.1.S1_at--74--6451Chr04:22585075..22585099 (25 bp)
GATCAGGTTATCAGCACGACGGAAA
LOC_Os04g38330
Os.50311.1.S1_at--16--271Chr04:22584987..22585011 (25 bp)
ATATGCCTGTTTCCGAGTATGTTAC
LOC_Os04g38330
Os.50311.1.S1_at--940--10051Chr04:22584970..22584994 (25 bp)
TATGTTACTCCCGAAGCCTTTGAGA
LOC_Os04g38330
Os.50311.1.S1_at--667--1331Chr04:22584948..22584972 (25 bp)
AGAGGTATCGATCCCTTGGTGTTGA
LOC_Os04g38330
Os.50311.1.S1_at--1010--10831NONE
TTGGTGTTGACATGGGCTTCCGTTA
NONE
Os.50311.1.S1_at--1014--8471Chr04:22584036..22584060 (25 bp)
TGGCTTCGGGCCCAATGGTTCGATC
LOC_Os04g38330
Os.50311.1.S1_at--735--6711Chr04:22584019..22584043 (25 bp)
GTTCGATCTTCCTACAAAGCTGGTG
LOC_Os04g38330
Os.50311.1.S1_at--31--251Chr04:22583941..22583965 (25 bp)
ATATAGTTGATCCTCTTTCCTTGAC
LOC_Os04g38330
Os.50311.1.S1_at--130--3171Chr04:22583845..22583869 (25 bp)
AATTGCAATCGTGCTCCTTTCAACT
LOC_Os04g38330
Os.50311.1.S1_at--773--8751Chr04:22583807..22583831 (25 bp)
TGTACCATTTCAACATCTCCAAGCT
LOC_Os04g38330
Os.50311.1.S1_at--1029--7491Chr04:22583728..22583752 (25 bp)
GTGGTCCAGTTGTCAATCATTCATT
LOC_Os04g38330
Target Sequence 
GATCAGGTTATCAGCACGACGGAAAAGGTTAGGGCTGCTGGTGTTGATGTAATGACATTTGGTCAGTACATGAGACCATN
TANNNGTCATATGCCTGTTTCCGAGTATGTTACTCCCGAAGCCTTTGAGAGGTATCGATCCCTTGGTGTTGACATGGGCT
TCCGTTATGTGGCTTCGGGCCCAATGGTTCGATCTTCCTACAAAGCTGGTGAGTTCTACATAAAAGCCATGATTGAAGCT
GACAGAGCAAAAGCTACGACTGCAATATAGTTGATCCTCTTTCCTTGACATTGTTACACTGCAAATAAAGTCGCAGGATT
CTAAAAGTTCTTATTGGAAAAACATGTTCATTTTTGTCATAATTGCAATCGTGCTCCTTTCAACTTCTCACTGCCCCTTG
TACCATTTCAACATCTCCAAGCTATGTTTGAAATTGTTGCTCTCTTTTGTTTTNTAANGNNAAAATCACGANTCCCTGTG
GTCCAGTTGTCAATCATTCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50311.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis