Browse Element(s) Details


Os.50316.1.S1_s_at

Description gb:AK120685.1
DB_XREF= gi:37990308
TID=Os.50316.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50316 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013164N07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013164N07, full insert sequence.
FL= gb:AK120685.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0866011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08630OsAffx.19542.3.S1_x_at10/116+4289192..4293413retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g08640OsAffx.27513.1.S1_s_at11/116+4300561..4302106Transferase family protein, expressed
LOC_Os06g08650OsAffx.27514.1.S1_at11/116+4312313..4314334pentatricopeptide, putative, expressed
LOC_Os06g08660Os.50316.1.S1_s_at11/116+4314724..4318250pentatricopeptide, putative, expressed
LOC_Os06g08660Os.50316.1.S1_at11/116+4314724..4318250pentatricopeptide, putative, expressed
LOC_Os06g08670Os.7552.1.S1_at11/116+4320684..4324284Phospholipid hydroperoxide glutathione peroxidase, chloroplast precursor, putative, expressed
LOC_Os06g08670OsAffx.15315.1.S1_at11/116+4320684..4324284Phospholipid hydroperoxide glutathione peroxidase, chloroplast precursor, putative, expressed
LOC_Os06g08680Os.49907.1.S1_at11/116+4328667..4329598expressed protein
LOC_Os06g08690OsAffx.27515.1.S1_at11/116+4330517..4333807Leucine Rich Repeat family protein, expressed
LOC_Os06g08690OsAffx.27515.1.S1_x_at11/116+4330517..4333807Leucine Rich Repeat family protein, expressed
LOC_Os06g08700OsAffx.26548.1.S1_at3/116+4335267..4335824retrotransposon protein, putative, unclassified
LOC_Os06g08710OsAffx.27515.2.S1_at11/116+4338308..4341792Leucine Rich Repeat family protein, expressed
LOC_Os06g08710OsAffx.27515.1.S1_x_at3/116+4338308..4341792Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50316.1.S1_s_at--885--4431Chr06:4315299..4315323 (25 bp)
GCCTAACATGCTGAAAGGACTGCAG
LOC_Os06g08660
Os.50316.1.S1_s_at--2--971Chr06:4315284..4315308 (25 bp)
AGGACTGCAGTATCTCAGCATCGAT
LOC_Os06g08660
Os.50316.1.S1_s_at--829--1531Chr06:4315268..4315292 (25 bp)
AGCATCGATTGTGCTCCGTTTGCTT
LOC_Os06g08660
Os.50316.1.S1_s_at--811--9071Chr06:4315123..4315147 (25 bp)
TGCTTCAAGGTTCACATGCATCCTG
LOC_Os06g08660
Os.50316.1.S1_s_at--301--2911Chr06:4315117..4315141 (25 bp)
AAGGTTCACATGCATCCTGATGAAT
LOC_Os06g08660
Os.50316.1.S1_s_at--291--6251Chr06:4315026..4315050 (25 bp)
GATGGTTGTGATAGTGCATGTACAT
LOC_Os06g08660
Os.50316.1.S1_s_at--64--7031Chr06:4314991..4315015 (25 bp)
GTACATGTGGGAAAACAGTTCTTGC
LOC_Os06g08660
Os.50316.1.S1_s_at--548--6251Chr06:4314965..4314989 (25 bp)
GATGGGTGTCATCTTTCCAACTAGA
LOC_Os06g08660
Os.50316.1.S1_s_at--882--431Chr06:4314955..4314979 (25 bp)
ATCTTTCCAACTAGAAGCCTTCCTG
LOC_Os06g08660
Os.50316.1.S1_s_at--4--5431Chr06:4314942..4314966 (25 bp)
GAAGCCTTCCTGTTGCAATTGGACA
LOC_Os06g08660
Os.50316.1.S1_s_at--495--8811Chr06:4314932..4314956 (25 bp)
TGTTGCAATTGGACACAGTTATATT
LOC_Os06g08660
Target Sequence 
GCCTAACATGCTGAAAGGACTGCAGTATCTCAGCATCGATTGTGCTCCGTTTGCTTTTGGGGTTTCGTTGTCTTGATCAT
TTGAAAATTCTTCAGCAGATGGGCGATAAGTGCATCTCCAGTTCTCTATATGCATGTTCACTTGTGTCAACTATCGGCTT
CTATGCCCATTCCAACTGCTTCAAGGTTCACATGCATCCTGATGAATAGAAGATGGGCAGGTTGCTTCAATGCTTTGAAC
TTTGAAGCTTTGTATCAATCTTGAGACAAATTTGATGGTTGTGATAGTGCATGTACATAATCAAACTTGTACATGTGGGA
AAACAGTTCTTGCAGATGGGTGTCATCTTTCCAACTAGAAGCCTTCCTGTTGCAATTGGACACAGTTATATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50316.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis