Browse Element(s) Details


Os.50337.1.S1_at

Description gb:AK120779.1
DB_XREF= gi:37990402
TID=Os.50337.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50337 (NCBI UniGene Cluster)
UG_TITLE=(indica cultivar-group) cell wall invertase 3 (CIN3) mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023009M11, full insert sequence.
FL= gb:AY342320.1 gb:AK120779.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3372011/11Beta-fructofuranosidase, insoluble isoenzyme 3 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33660Os.24816.1.A1_at11/114+20200327..20202617Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os04g33670Os.55574.1.S1_at11/114+20204614..20205695expressed protein
LOC_Os04g33680Os.47985.1.S1_at11/114+20206158..20207892Glutaredoxin family protein, expressed
LOC_Os04g33690Os.53585.1.S1_at11/114+20210709..20218358Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os04g33700OsAffx.26311.1.S1_at11/114+20218550..20223018ABC transporter transmembrane region family protein, expressed
LOC_Os04g33710Os.7509.1.S1_at11/114+20223788..20224534expressed protein
LOC_Os04g33720Os.50337.1.S1_at11/114+20224928..20227854Beta-fructofuranosidase, insoluble isoenzyme 3 precursor, putative, expressed
LOC_Os04g33730OsAffx.14116.1.S1_at11/114+20230880..20231943hypothetical protein
LOC_Os04g33740Os.50640.1.S1_at10/114+20234783..20239629Beta-fructofuranosidase, insoluble isoenzyme 2 precursor, putative, expressed
LOC_Os04g33750Os.12220.1.S1_at11/114+20245097..2024836640S ribosomal protein S14, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50337.1.S1_at--450--1011Chr04:20227329..20227353 (25 bp)
AGGTCACCAACCTGGACGCCTGGGA
LOC_Os04g33720
Os.50337.1.S1_at--448--5811Chr04:20227343..20227367 (25 bp)
GACGCCTGGGAGATGAAGACCCCGA
LOC_Os04g33720
Os.50337.1.S1_at--953--6951Chr04:20227393..20227417 (25 bp)
GTAGCAAGCAGCACATCAGCCTAGA
LOC_Os04g33720
Os.50337.1.S1_at--964--9651Chr04:20227408..20227432 (25 bp)
TCAGCCTAGACATGGTGGTTGTAGC
LOC_Os04g33720
Os.50337.1.S1_at--728--9891Chr04:20227435..20227459 (25 bp)
TACTGGTAGAGTAGCCGCCTAGCCG
LOC_Os04g33720
Os.50337.1.S1_at--692--9991Chr04:20227454..20227478 (25 bp)
TAGCCGGGCGTTTAGCTAGCTACTC
LOC_Os04g33720
Os.50337.1.S1_at--584--1194Chr04:20227500..20227524 (25 bp)
AGTTTTAACACTGTTCATGTCCAAC
LOC_Os04g33720
Os.50337.1.S1_at--486--8592Chr05:1084554..1084578 (25 bp)
TGGTCAAAACGCTGAGTACGCATAT
NONE
Os.50337.1.S1_at--1057--1173Chr05:1084568..1084592 (25 bp)
AGTACGCATATCTATGGCTGCACTT
NONE
Os.50337.1.S1_at--418--6951Chr04:20227713..20227737 (25 bp)
GTAGATACTAGCTTCTTTAGCTGAG
LOC_Os04g33720
Os.50337.1.S1_at--367--9731Chr04:20227815..20227839 (25 bp)
TAATTGTTGCACTCAATGCGTGAAG
LOC_Os04g33720
Target Sequence 
AGGTCACCAACCTGGACGCCTGGGAGATGAAGACCCCGAAGATGAACGCGGAGGAGTAGCAGCAGTAGCAAGCAGCACAT
CAGCCTAGACATGGTGGTTGTAGCAGTACTGGTAGAGTAGCCGCCTAGCCGGGCGTTTAGCTAGCTACTCTCTCCGTCCC
AAAATAAGTCCAGTTTTAACACTGTTCATGTCCAACATTTGACCGTTCGTCTTATTTGAAAAAAGATTATGATTAGTATT
TTTATTGTTATTAGATGATAAAACATGAATAGTACTTTATGTGTGACTAATTTTTAAATATTTTTTATAAATTTTTCAAA
CAGACGGATGGTCAAAACGCTGAGTACGCATATCTATGGCTGCACTTATTTTGGGACGGAGGTAGTAGATACTAGCTTCT
TTAGCTGAGATTTTGGGATAAATTTGGAGGCTGCAGTGTAGTGTTTTGATGCATTGTTAGGGAAAGAAATGGTCTGTTTT
GTATCATAATTGTTGCACTCAATGCGTGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50337.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis