Browse Element(s) Details


Os.50385.1.S1_s_at

Description gb:AK120982.1
DB_XREF= gi:37990605
TID=Os.50385.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.50385 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023042C18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023042C18, full insert sequence.
FL= gb:AK120982.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4938011/11hydrolase, alpha/beta fold family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49330Os.35041.2.S1_x_at11/111+28690886..28694881methionyl-tRNA formyltransferase family protein, expressed
LOC_Os01g49330Os.35041.1.S1_at10/111+28690886..28694881methionyl-tRNA formyltransferase family protein, expressed
LOC_Os01g49340Os.32007.1.S1_x_at11/111+28694783..28697378expressed protein
LOC_Os01g49340Os.54637.1.S1_at11/111+28694783..28697378expressed protein
LOC_Os01g49340Os.32007.1.S1_at10/111+28694783..28697378expressed protein
LOC_Os01g49350Os.33804.2.S1_x_at11/111+28697767..28701355expressed protein
LOC_Os01g49350Os.33804.1.S1_at11/111+28697767..28701355expressed protein
LOC_Os01g49350Os.25168.2.A1_at3/111+28697767..28701355expressed protein
LOC_Os01g49350OsAffx.6448.1.S1_at1/111+28697767..28701355expressed protein
LOC_Os01g49360OsAffx.11528.1.S1_at11/111+28703433..28706534FAD-binding domain-containing protein, putative, expressed
LOC_Os01g49370OsAffx.24369.13.S1_s_at11/111+28707937..28710487expressed protein
LOC_Os01g49380Os.50385.1.S1_at11/111+28710868..28714006hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g49380Os.50385.1.S1_s_at11/111+28710868..28714006hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g49380Os.45956.1.S1_x_at9/111+28710868..28714006hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g49380Os.7467.1.S1_at1/111+28710868..28714006hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g49390OsAffx.11529.1.S1_at11/111+28730450..28731541IPP transferase family protein, expressed
LOC_Os01g49400OsAffx.9280.1.S1_at11/111+28733226..28733741hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50385.1.S1_s_at--187--6971Chr01:28711425..28711446 (22 bp)
GTAGCTGAGTACAATGCCATTTCAT
LOC_Os01g49380
Os.50385.1.S1_s_at--292--3012Chr08:8220853..8221068 (25 bp)
AATGCCATTTCATATACCCAACAAA
NONE
Os.50385.1.S1_s_at--458--5031Chr01:28711374..28711398 (25 bp)
GCAGTTGAACTTTTGAAGGCTACAA
LOC_Os01g49380
Os.50385.1.S1_s_at--1082--1451Chr01:28711194..28711215 (22 bp)
AGAAGATTTGTTCCCCATTGCTGAT
LOC_Os01g49380
Os.50385.1.S1_s_at--725--71Chr01:28711178..28711202 (25 bp)
ATTGCTGATTCTCCACGGAGCAGCA
LOC_Os01g49380
Os.50385.1.S1_s_at--602--3951Chr01:28711163..28711187 (25 bp)
CGGAGCAGCAGACTTGGTTACCGAC
LOC_Os01g49380
Os.50385.1.S1_s_at--182--10671Chr01:28711123..28711147 (25 bp)
TTCCTGTACGAGAAAGCTAGCACAA
LOC_Os01g49380
Os.50385.1.S1_s_at--290--431Chr01:28711065..28711089 (25 bp)
ATCATTCTATCTTAGAGGGTGAACC
LOC_Os01g49380
Os.50385.1.S1_s_at--132--191Chr01:28711030..28711054 (25 bp)
ATTTCAACTGCCATTAACGACATCA
LOC_Os01g49380
Os.50385.1.S1_s_at--128--9811Chr01:28711016..28711040 (25 bp)
TAACGACATCATTTCATGGCTGGAT
LOC_Os01g49380
Os.50385.1.S1_s_at--393--10531Chr01:28711004..28711028 (25 bp)
TTCATGGCTGGATTCGCACTGCTGA
LOC_Os01g49380
Target Sequence 
GTAGCTGAGTACAATGCCATTTCATATACCCAACAAATGAGGTTGAGGACAGCAGTTGAACTTTTGAAGGCTACAAAGGA
CATAGAATCCCAGTTGGAGAAGATTTGTTCCCCATTGCTGATTCTCCACGGAGCAGCAGACTTGGTTACCGACCCCCATG
TCAGCGAATTCCTGTACGAGAAAGCTAGCACAAAAGACAAGACTCTCAAGCTCTACGAAGATGGATATCATTCTATCTTA
GAGGGTGAACCTGATGACCGGATTTCAACTGCCATTAACGACATCATTTCATGGCTGGATTCGCACTGCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50385.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis