Browse Element(s) Details


Os.5041.1.S1_at

Description gb:AK069651.1
DB_XREF= gi:32979675
TID=Os.5041.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5041 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023031E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023031E09, full insert sequence.
FL= gb:AK069651.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5150011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51470Os.35344.3.S1_x_at11/114+30268041..30275304Transposable element protein, putative, MuDR
LOC_Os04g51470Os.35344.18.S1_x_at10/114+30268041..30275304Transposable element protein, putative, MuDR
LOC_Os04g51470OsAffx.22940.5.S1_x_at3/114+30268041..30275304Transposable element protein, putative, MuDR
LOC_Os04g51480OsAffx.26560.1.S1_at11/114+30276469..30277205expressed protein
LOC_Os04g51490OsAffx.31174.3.S1_x_at11/114+30280028..30284344hypothetical protein
LOC_Os04g51490OsAffx.31174.1.S1_at10/114+30280028..30284344hypothetical protein
LOC_Os04g51500Os.5041.1.S1_at11/114+30291436..30294793expressed protein
LOC_Os04g51510OsAffx.29184.2.S1_at11/114+30299849..30301033Glycosyl hydrolases family 16 protein, expressed
LOC_Os04g51520Os.50883.1.S1_at9/114+30301276..30304461Glycosyl hydrolases family 16 protein, expressed
LOC_Os04g51530NANA4+30307162..30310450retrotransposon protein, putative, unclassified
LOC_Os04g51540NANA4+30311074..30317228retrotransposon protein, putative, unclassified
LOC_Os04g51550NANA4+30317862..30318772retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5041.1.S1_at--985--3591Chr04:30292450..30292474 (25 bp)
CTTGGGTTAGTTTGCTTGAGACGTA
LOC_Os04g51500
Os.5041.1.S1_at--676--6111Chr04:30292413..30292437 (25 bp)
GAGTGCTAGCCCTGAAGCTGATGGT
LOC_Os04g51500
Os.5041.1.S1_at--148--8891Chr04:30292389..30292413 (25 bp)
TGAGGCATATGATGTGGGTCTTCTT
LOC_Os04g51500
Os.5041.1.S1_at--488--5611Chr04:30292302..30292326 (25 bp)
GACAAGTGATGCTGCCTTTGATGAA
LOC_Os04g51500
Os.5041.1.S1_at--1121--2771Chr04:30292279..30292303 (25 bp)
AAGAGAGTGCTAGCCCTGGAGACGC
LOC_Os04g51500
Os.5041.1.S1_at--623--8051Chr04:30292262..30292286 (25 bp)
GGAGACGCTACCAAAGAGGCTGATA
LOC_Os04g51500
Os.5041.1.S1_at--1073--471Chr04:30292194..30292218 (25 bp)
ATCTGTAGAGTGGAGGCCTATGGCT
LOC_Os04g51500
Os.5041.1.S1_at--526--4451Chr04:30292179..30292203 (25 bp)
GCCTATGGCTTGAGTTCTTCAGTGA
LOC_Os04g51500
Os.5041.1.S1_at--182--7131Chr04:30292101..30292125 (25 bp)
GTCATGTGTCATCTAGGTATCATCT
LOC_Os04g51500
Os.5041.1.S1_at--257--10231Chr04:30292028..30292052 (25 bp)
TATTGTCATGTCTCATCTAGGAGAA
LOC_Os04g51500
Os.5041.1.S1_at--259--8891Chr04:30291990..30292014 (25 bp)
TGAGGCAATCTAACATCGGCTACTT
LOC_Os04g51500
Target Sequence 
CTTGGGTTAGTTTGCTTGAGACGTATGCTAATGAGAGGAGTGCTAGCCCTGAAGCTGATGGTGAGGCATATGATGTGGGT
CTTCTTNATGACAAGACTGGAGACGCCAGTGCTGATCTTGACTATGAAAANAGTGCCTGCTCTGGAGAGACAAGTGATGC
TGCCTTTGATGAAGAGAGTGCTAGCCCTGGAGACGCTACCAAAGAGGCTGATATTGATGAACCGNTTGCTATCCTGGGGA
CGCCAATGGTGGCAAGATCTGTAGAGTGGAGGCCTATGGCTTGAGTTCTTCAGTGAAGGAAAAGTACTTGGATAAATGCT
TCCTAACGTTGTCATATATTCCTGATATTGTCATGTGTCATCTAGGTATCATCTAGGAAAGTACTTGGATAAATGCTTCC
TAACGTTGTCATATATTCCTGATATTGTCATGTCTCATCTAGGAGAAGTTCAGAAGCCCCTGAGGCAATCTAACATCGGC
TACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5041.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis