Browse Element(s) Details


Os.50438.1.S1_at

Description gb:AK121198.1
DB_XREF= gi:37990821
TID=Os.50438.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.50438 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023087D21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023087D21, full insert sequence.
FL= gb:AK121198.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3653011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36490Os.21243.1.S1_at11/112+22032795..22036110expressed protein
LOC_Os02g36500Os.5798.1.S1_at10/112+22038030..22041031expressed protein
LOC_Os02g36510OsAffx.24599.1.S1_s_at11/112+22051059..22052742ETHYLENE-INSENSITIVE3-like 5 protein, putative, expressed
LOC_Os02g36510Os.55635.1.S1_at11/112+22051059..22052742ETHYLENE-INSENSITIVE3-like 5 protein, putative, expressed
LOC_Os02g36520Os.5656.1.S1_at11/112+22054965..22057498Kelch motif family protein, expressed
LOC_Os02g36530Os.50438.1.S1_at11/112+22059072..22059723expressed protein
LOC_Os02g36540OsAffx.24600.1.S1_at10/112+22059837..22061819hypothetical protein
LOC_Os02g36550Os.49268.1.S1_at11/112+22062145..22064814DNA/pantothenate metabolism flavoprotein, expressed
LOC_Os02g36560OsAffx.2880.1.S1_at11/112+22068125..22068794hypothetical protein
LOC_Os02g36570Os.11616.1.S1_at10/112+22071618..22079406ABC1 family protein, putative, expressed
LOC_Os02g36580OsAffx.2881.1.S1_at11/112+22084576..22085514hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50438.1.S1_at--679--5171Chr02:22059638..22059662 (25 bp)
GCAAGCAAGGTGTGATCTGATCCAA
LOC_Os02g36530
Os.50438.1.S1_at--811--4471Chr02:22059363..22059387 (25 bp)
GCCGGCCATGGAAACCAGTAGCGCT
LOC_Os02g36530
Os.50438.1.S1_at--394--2371Chr02:22059352..22059376 (25 bp)
AAACCAGTAGCGCTTGATCGATCAA
LOC_Os02g36530
Os.50438.1.S1_at--798--6391Chr02:22059337..22059361 (25 bp)
GATCGATCAAGAGCTGGCCTTCTTC
LOC_Os02g36530
Os.50438.1.S1_at--741--91Chr02:22059295..22059319 (25 bp)
ATTCCGCTCTTTTGCTACTAGTTGA
LOC_Os02g36530
Os.50438.1.S1_at--393--2031Chr02:22059279..22059303 (25 bp)
ACTAGTTGAGCTTGTTCCTGGGTTT
LOC_Os02g36530
Os.50438.1.S1_at--534--2031Chr02:22059242..22059266 (25 bp)
ACTAGTAGTAATCTCCAGCTGGCTG
LOC_Os02g36530
Os.50438.1.S1_at--657--4351Chr02:22059228..22059252 (25 bp)
CCAGCTGGCTGTTCGATAGGATGAT
LOC_Os02g36530
Os.50438.1.S1_at--242--1111Chr02:22059192..22059216 (25 bp)
AGTGTGTTCTTTACTTGTTTCTCTT
LOC_Os02g36530
Os.50438.1.S1_at--268--6151Chr02:22059159..22059183 (25 bp)
GAGGTGTGTGTAACTCACTCCATGT
LOC_Os02g36530
Os.50438.1.S1_at--906--9811Chr02:22059073..22059097 (25 bp)
TAAAAGAGGACTCATCTGTTCTCCA
LOC_Os02g36530
Target Sequence 
GCAAGCAAGGTGTGATCTGATCCAAGTTTTTGGAGAATGGCGTCCATGATGGGAGGAGACTTCGTGGAGGCGTACGTGCT
CAAGAACGCCTACAAGGAGAAGCTCAGGCGCATGGAGGCCGCGGAGGCGGCTGCGGCGGCGGCGGTGGCCGGGAAGAAGG
ACGTCGCCGCCGCCGCCGATGGCTCTGCGGGGCAGAAGAAGGCGGCTGCGGGCGGCGGGATGTTTGGGTTCATGAAGAAG
AAGGTGCACCCCAGAGCGGCGGAGACGGCGCCGGCGCCGGCCATGGAAACCAGTAGCGCTTGATCGATCAAGAGCTGGCC
TTCTTCCTCCCCTCCTCCTGTTGATTCCGCTCTTTTGCTACTAGTTGAGCTTGTTCCTGGGTTTAATTATATTATTACTA
GTAGTAATCTCCAGCTGGCTGTTCGATAGGATGATGAAGATTGTGTAGTGTGTTCTTTACTTGTTTCTCTTCTTTTGAAG
AGGTGTGTGTAACTCACTCCATGTAAATGTTGGTTCATTTGTTGCTTTCTTTACTTGAAATGGGAGTAAAAGAAAAGTAA
TNANNTAAAAGAGGACTCATCTGTTCTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50438.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis