Browse Element(s) Details


Os.5045.1.S1_at

Description gb:AK102138.1
DB_XREF= gi:32987347
TID=Os.5045.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.5045 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0409B08.18 (P0409B08.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033085I16, full insert sequence.
FL= gb:AK105455.1 gb:AK102138.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0368011/11Bowman-Birk serine protease inhibitor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03630Os.31788.1.S1_at11/111+1487296..1489948Multicopper oxidase family protein, expressed
LOC_Os01g03630Os.18067.1.S1_at1/111+1487296..1489948Multicopper oxidase family protein, expressed
LOC_Os01g03640OsAffx.10896.1.S1_at11/111+1494345..1497143Multicopper oxidase family protein, expressed
LOC_Os01g03650Os.845.1.A1_at10/111+1500813..1504859sufB/sufD domain containing protein, expressed
LOC_Os01g03650Os.845.2.A1_x_at9/111+1500813..1504859sufB/sufD domain containing protein, expressed
LOC_Os01g03650Os.845.2.A1_at5/111+1500813..1504859sufB/sufD domain containing protein, expressed
LOC_Os01g03660Os.18008.1.S1_at10/111+1505037..1509554Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g03660OsAffx.23102.1.S1_at10/111+1505037..1509554Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g03670Os.20305.1.S1_at11/111+1509940..1511264NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os01g03680Os.5045.1.S1_at11/111+1512639..1513529Bowman-Birk serine protease inhibitor family protein, expressed
LOC_Os01g03690Os.53501.1.S1_at11/111+1515049..1518438serine/threonine-protein kinase receptor precursor, putative, expressed
LOC_Os01g03710Os.34778.1.S1_at11/111+1530937..1536422mannose-6-phosphate isomerase, class I family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5045.1.S1_at--402--5811Chr01:1513046..1513070 (25 bp)
GACGCCGTGTGCACAAGGTCGATGC
LOC_Os01g03680
Os.5045.1.S1_at--869--4091Chr01:1513074..1513098 (25 bp)
CGACGTGCAGCTGCCAGGACAAGGT
LOC_Os01g03680
Os.5045.1.S1_at--238--3491Chr01:1513088..1513112 (25 bp)
CAGGACAAGGTGAAGTCGTGCTCCG
LOC_Os01g03680
Os.5045.1.S1_at--464--7571Chr01:1513190..1513214 (25 bp)
GGGCCCAAGTGTCACAACCAGCCAG
LOC_Os01g03680
Os.5045.1.S1_at--283--9911Chr01:1513225..1513249 (25 bp)
TACTCATGTTAATTAGCCTCAGATC
LOC_Os01g03680
Os.5045.1.S1_at--805--131Chr01:1513236..1513260 (25 bp)
ATTAGCCTCAGATCATACGATCCAA
LOC_Os01g03680
Os.5045.1.S1_at--468--4231Chr01:1513336..1513360 (25 bp)
CCGAGTAGCAGTGACATATGTGTAA
LOC_Os01g03680
Os.5045.1.S1_at--174--2511Chr01:1513359..1513383 (25 bp)
AACATTCGTGTGGTCACGTATGTTT
LOC_Os01g03680
Os.5045.1.S1_at--872--10831Chr01:1513413..1513437 (25 bp)
TTGTGTTTGTTTTATCTGGATCGTG
LOC_Os01g03680
Os.5045.1.S1_at--1016--4091Chr01:1513445..1513469 (25 bp)
GTTTCGGTGACCAGAGTACGTAGTA
LOC_Os01g03680
Os.5045.1.S1_at--37--731Chr01:1513475..1513499 (25 bp)
ATGTTGTGGTTGCTGTCCAATAAAT
LOC_Os01g03680
Target Sequence 
GACGCCGTGTGCACAAGGTCGATGCCGCCGACGTGCAGCTGCCAGGACAAGGTGAAGTCGTGCTCCGGCGGCTGCGGCAA
GTGCGTGCAGGTGGAGTCGCAGCCGCCGCGCTTCCGCTGCCTCGATCGCTACCACGGCTTCCCGGGGCCCAAGTGTCACA
ACCAGCCAGCTTNAATTAGCTACTCATGTTAATTAGCCTCAGATCATACGATCCAACNGGTGAATAAGAGCGACGCGTCG
AGCAGGGGCGCACGCGCTGACCGCTCGATCANGCGTTAACGCCTTGCTTNGCTGCCGAGTAGCAGTGACATATGTGTAAC
ATTCGTGTGGTCACGTATGTTTTTTTNCCTTTATTGTGTTTTTTTTTCTTTATTGTGTTTGTTTTATCTGGATCGTGAGG
GAATGTTTCGGTGACCAGAGTACGTAGTACTAGTATGTTGTGGTTGCTGTCCAATAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5045.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis