Browse Element(s) Details


Os.50472.1.S1_at

Description gb:AK070752.1
DB_XREF= gi:32980775
TID=Os.50472.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50472 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023064N19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023064N19, full insert sequence.
FL= gb:AK070752.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g149841/11hypothetical protein
LOC_Os08g180801/11hypothetical protein
LOC_Os06g219701/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g14939OsAffx.32108.1.S1_x_at1/1112+8541746..8541999hypothetical protein
LOC_Os12g14948NANA12+8545147..8545393NA
LOC_Os12g14960OsAffx.18193.1.S1_at1/1112+8559512..8560324Transposable element protein, putative, Retrotrans_gag
LOC_Os12g14972NANA12+8561400..8561778NA
LOC_Os12g14984OsAffx.19678.2.S1_at11/1112+8565599..8569302hypothetical protein
LOC_Os12g14984Os.39852.1.S1_at1/1112+8565599..8569302hypothetical protein
LOC_Os12g14984Os.50472.1.S1_at1/1112+8565599..8569302hypothetical protein
LOC_Os12g14984OsAffx.6678.1.S1_at1/1112+8565599..8569302hypothetical protein
LOC_Os12g15000OsAffx.19675.1.A1_at1/1112+8569634..8570586retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g15010OsAffx.19542.3.S1_x_at4/1112+8571866..8575111retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g15020NANA12+8579767..8582295hypothetical protein
LOC_Os12g15030OsAffx.16111.1.S1_at1/1112+8582757..8586247retrotransposon protein, putative, unclassified
LOC_Os12g15030OsAffx.22699.1.S1_x_at1/1112+8582757..8586247retrotransposon protein, putative, unclassified
LOC_Os12g15030Os.18448.1.S1_at1/1112+8582757..8586247retrotransposon protein, putative, unclassified
LOC_Os12g15040NANA12+8587701..8588933retrotransposon protein, putative, unclassified
LOC_Os12g15050NANA12+8589377..8590915hypothetical protein
LOC_Os12g15060Os.51869.1.S1_at2/1112+8591396..8599351retrotransposon protein, putative, unclassified
LOC_Os12g15060Os.45173.1.S1_x_at2/1112+8591396..8599351retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50472.1.S1_at--767--44123Chr11:13647779..13647800 (22 bp)
GCCAGTATTAGGTTCACTAACCTTT
NONE
Os.50472.1.S1_at--1139--3295Chr12:18506160..18506183 (24 bp)
CACAAGTCTGCATAAAGGAGCAATA
NONE
Os.50472.1.S1_at--997--10233Chr10:3737889..3737913 (25 bp)
TTTGGCCGAACCCATCCTGATGCTG
NONE
Os.50472.1.S1_at--1139--4092Chr05:18643009..18643028 (20 bp)
CGAACCCATCCTGATGCTGTTGGAT
NONE
Os.50472.1.S1_at--697--552Chr05:18643011..18643035 (25 bp)
ATCCTGATGCTGTTGGATGCAGGGT
NONE
Os.50472.1.S1_at--695--10735Chr12:20271352..20271374 (23 bp)
TTGGAGGGCACTTCGGATAATTCTG
NONE
Os.50472.1.S1_at--305--8251Chr10:3737809..3737833 (25 bp)
GGCACTTCGGATAATTCTGCTTCCA
NONE
Os.50472.1.S1_at--954--3311Chr10:3737807..3737831 (25 bp)
CACTTCGGATAATTCTGCTTCCACA
NONE
Os.50472.1.S1_at--282--95521Chr12:10653815..10653840 (25 bp)
TCTATATAAGGACTTCACTCTCTTC
NONE
Os.50472.1.S1_at--406--9418Chr07:8648123..8648190 (25 bp)
TCGGGTATGGCTATAGTAACTCTTC
NONE
Os.50472.1.S1_at--43--871Chr10:3737617..3737641 (25 bp)
ATGGCTATAGTAACTCTTCTCTTCT
NONE
Target Sequence 
GCCAGTATTAGGTTCACTAACCTTTTGCAGAGAATGATCATTAAATGGAGGAGAATCGGCATCAACTAAGACGATAAATC
ATTCGGACGATGTCGAGAATCAGACTTATGCATGAATGGGCTAAGAACTCAGAATTGACACGATGAATTGGGCCAAAATT
CACAAGTCTGCATAAAGGAGCAATAGAGGAGGCCACCAGCCGAAGATGGGCCGGGATGGCCCAGCCCATGGTTTGGCCGA
ACCCATCCTGATGCTGTTGGATGCAGGGTTCGGCGTGGACGTCCAGGATTGCATCCCAATGACGGTTGGAGGGCACTTCG
GATAATTCTGCTTCCACAACCGTCATAACTACCTCTATATAAGGACTTCACTCTCTTCACTTCAACACACACCTCAAGCA
AGAGCTCTCTTATATTCTCTCAAGTTAGTTTAATGTTCTTAAGCTAGTGGAATAGGAATAGAGTAGAAATCAGGAGTCCG
GAAGCCTTCGGAAGAGTTCGGGTATGGCTATAGTAACTCTTCTCTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50472.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis