Browse Element(s) Details


OsAffx.19678.2.S1_at

Description tigr:9640.m01456
TID=OsAffx.19678.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1498411/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g14939OsAffx.32108.1.S1_x_at1/1112+8541746..8541999hypothetical protein
LOC_Os12g14948NANA12+8545147..8545393NA
LOC_Os12g14960OsAffx.18193.1.S1_at1/1112+8559512..8560324Transposable element protein, putative, Retrotrans_gag
LOC_Os12g14972NANA12+8561400..8561778NA
LOC_Os12g14984OsAffx.19678.2.S1_at11/1112+8565599..8569302hypothetical protein
LOC_Os12g14984Os.39852.1.S1_at1/1112+8565599..8569302hypothetical protein
LOC_Os12g14984Os.50472.1.S1_at1/1112+8565599..8569302hypothetical protein
LOC_Os12g14984OsAffx.6678.1.S1_at1/1112+8565599..8569302hypothetical protein
LOC_Os12g15000OsAffx.19675.1.A1_at1/1112+8569634..8570586retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g15010OsAffx.19542.3.S1_x_at4/1112+8571866..8575111retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g15020NANA12+8579767..8582295hypothetical protein
LOC_Os12g15030OsAffx.16111.1.S1_at1/1112+8582757..8586247retrotransposon protein, putative, unclassified
LOC_Os12g15030OsAffx.22699.1.S1_x_at1/1112+8582757..8586247retrotransposon protein, putative, unclassified
LOC_Os12g15030Os.18448.1.S1_at1/1112+8582757..8586247retrotransposon protein, putative, unclassified
LOC_Os12g15040NANA12+8587701..8588933retrotransposon protein, putative, unclassified
LOC_Os12g15050NANA12+8589377..8590915hypothetical protein
LOC_Os12g15060Os.51869.1.S1_at2/1112+8591396..8599351retrotransposon protein, putative, unclassified
LOC_Os12g15060Os.45173.1.S1_x_at2/1112+8591396..8599351retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19678.2.S1_at--467--5451Chr12:8568478..8568502 (25 bp)
GAACGCAAGTCAGGGTGCAACCAGT
LOC_Os12g14984
OsAffx.19678.2.S1_at--1079--1031Chr12:8568467..8568491 (25 bp)
AGGGTGCAACCAGTTGGCTTCCGTC
LOC_Os12g14984
OsAffx.19678.2.S1_at--103--3211Chr12:8568408..8568432 (25 bp)
CAAGGACCGCAGTTTGACCCCAACA
LOC_Os12g14984
OsAffx.19678.2.S1_at--869--2831Chr12:8568374..8568398 (25 bp)
AAGTACCAACCATTCGACCGCAGGC
LOC_Os12g14984
OsAffx.19678.2.S1_at--322--5011Chr12:8568355..8568379 (25 bp)
GCAGGCAACAGCATCAGGCTTCAGA
LOC_Os12g14984
OsAffx.19678.2.S1_at--887--9631Chr12:8568335..8568359 (25 bp)
TCAGAACAAATCAAGCGCCGAACCA
LOC_Os12g14984
OsAffx.19678.2.S1_at--696--2131Chr12:8568180..8568204 (25 bp)
ACACCATATCCACAACCGAATTGGC
LOC_Os12g14984
OsAffx.19678.2.S1_at--915--2611Chr12:8568167..8568191 (25 bp)
AACCGAATTGGCCTTCGCAGCAAGG
LOC_Os12g14984
OsAffx.19678.2.S1_at--913--6371Chr12:8568027..8568051 (25 bp)
GATCCGAAGGAGTTTCTATACATAT
LOC_Os12g14984
OsAffx.19678.2.S1_at--275--3691Chr12:8568012..8568036 (25 bp)
CTATACATATACGAGTCCGCGTTCG
LOC_Os12g14984
OsAffx.19678.2.S1_at--618--6691Chr12:8567992..8568016 (25 bp)
GTTCGAAGCCGCTTACGGCGACGAA
LOC_Os12g14984
Target Sequence 
GAACGCAAGTCAGGGTGCAACCAGTTGGCTTCCGTCGAACCAGCCTGGTCCGGGGGCTTTGCTGTGGAGTCAAGGACCGC
AGTTTGACCCCAACACTGCCACCCAAGTACCAACCATTCGACCGCAGGCAACAGCATCAGGCTTCAGAACAAATCAAGCG
CCGAACCAGGTCGCCATGGCATGGACCCAGCCTATGTTTGACCCATCCATGGCGGCTCACCAAGCGCCACCATTCGGGGC
TGGGCAGCCGAACCCTATGGCCCAACCTCACGCGCAAGACATGACTTCGCCCTTCGCCACACCATATCCACAACCGAATT
GGCCTTCGCAGCAAGGTGCCGTGAACAAGGCGGGGGGCGAAAAGGGGCTACCACTGAGCTGGGGAATCAAGAATCACCCA
ATCCCACCCCAGTTCAAGTTCCCACCCGTTCCGCGGTACTCGGGCGAAACAGATCCGAAGGAGTTTCTATACATATACGA
GTCCGCGTTCGAAGCCGCTTACGGCGACGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19678.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis