Browse Element(s) Details


Os.50473.1.S1_at

Description gb:AK121330.1
DB_XREF= gi:37990953
TID=Os.50473.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50473 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023118F05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023118F05, full insert sequence.
FL= gb:AK121330.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3700011/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g36970OsAffx.31338.2.S1_at10/1111+21315132..21322141Zinc finger, C3HC4 type family protein
LOC_Os11g36970OsAffx.31338.1.S1_at9/1111+21315132..21322141Zinc finger, C3HC4 type family protein
LOC_Os11g36970OsAffx.29218.1.S1_s_at8/1111+21315132..21322141Zinc finger, C3HC4 type family protein
LOC_Os11g36970OsAffx.2057.3.S1_at1/1111+21315132..21322141Zinc finger, C3HC4 type family protein
LOC_Os11g36980OsAffx.19206.1.S1_x_at10/1111+21323412..21324285hypothetical protein
LOC_Os11g36980Os.27542.1.A1_at2/1111+21323412..21324285hypothetical protein
LOC_Os11g36990NANA11+21326069..21329390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g37000Os.50473.1.S1_at11/1111+21337869..21342223DnaJ domain containing protein, expressed
LOC_Os11g37010Os.54122.1.S1_at11/1111+21348936..21350769expressed protein
LOC_Os11g37020NANA11+21352055..21353460retrotransposon protein, putative, unclassified
LOC_Os11g37040Os.53816.1.S1_at11/1111+21359150..21362535expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50473.1.S1_at--618--632Chr11:21341628..21341652 (25 bp)
ATGCTATTGGCAAGATCGTCGACTC
LOC_Os11g37000
Os.50473.1.S1_at--135--4092Chr11:21341647..21341671 (25 bp)
CGACTCCACTGAAGCTTTCACATTA
LOC_Os11g37000
Os.50473.1.S1_at--1150--7872Chr11:21341696..21341720 (25 bp)
GGTTACATCTCTGTGTTCAAGCCTG
LOC_Os11g37000
Os.50473.1.S1_at--1131--7872Chr11:21341766..21341790 (25 bp)
GGTTTTCTCATCGAATACCATCGTT
LOC_Os11g37000
Os.50473.1.S1_at--119--7531Chr11:21341811..21341835 (25 bp)
GTGGAAAGCTCCATGACTGCTATGA
LOC_Os11g37000
Os.50473.1.S1_at--374--8811Chr11:21341851..21341875 (25 bp)
TGTTCCTGATGTTTTTCTACACAAG
LOC_Os11g37000
Os.50473.1.S1_at--1149--471Chr11:21341970..21341994 (25 bp)
ATCTGAGTTTCTGTACAGGGCGCGC
LOC_Os11g37000
Os.50473.1.S1_at--506--1091Chr11:21341986..21342010 (25 bp)
AGGGCGCGCCCAATTATGTTAGAAA
LOC_Os11g37000
Os.50473.1.S1_at--188--3871Chr11:21342042..21342066 (25 bp)
CTGTTGAATTTCACGCTTTCTGGTG
LOC_Os11g37000
Os.50473.1.S1_at--432--4752Chr11:21342082..21342106 (25 bp)
GCTGATCTATTGCTTTGCTGTCTGA
LOC_Os11g37000
Os.50473.1.S1_at--492--2992Chr11:21342170..21342194 (25 bp)
AATGTACTTATGTGTCTGACCATCA
LOC_Os11g37000
Target Sequence 
ATGCTATTGGCAAGATCGTCGACTCCACTGAAGCTTTCACATTATTTGGTTATCTGACTAAAGTTGATGGTTACATCTCT
GTGTTCAAGCCTGATGTACGAAGGGGAATTCTGAAGATTCCTGTGAAAGAGAACCTGAGGTTTTCTCATCGAATACCATC
GTTTTGTCTCACAAAAGAGAAAGGTGGAAAGCTCCATGACTGCTATGAGCTCGACCCAGCTGCTGTTCCTGATGTTTTTC
TACACAAGAATTGAAGGAAAAGAACTCCCACAAAAAAGGACTAATCTTAGAAATTAAGAGTGAAGATATCTCATGATAGA
GTCATCTAGCATTATGATATGTATCTGAGTTTCTGTACAGGGCGCGCCCAATTATGTTAGAAAAGTATTCATGTTTCATA
ATCATGACTAATTTCTGTTGAATTTCACGCTTTCTGGTGAAACTGATCTACAATGCTGATCTATTGCTTTGCTGTCTGAA
GAAACTAAGAAGAATATGTATTCTTCTCAAGTTTGAATTATGTATTTATGATACATAACATTAATGTACTTATGTGTCTG
ACCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50473.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis