Browse Element(s) Details


Os.505.1.S1_x_at

Description gb:NM_189578.1
DB_XREF= gi:34906239
GEN=P0489A01.4
TID=Os.505.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.505 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0489A01.4 (P0489A01.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0489A01.4 (P0489A01.4), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0875011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08710Os.55762.1.S1_at11/111+4337651..4353270WRKY DNA binding domain containing protein, expressed
LOC_Os01g08710Os.30505.1.S1_at10/111+4337651..4353270WRKY DNA binding domain containing protein, expressed
LOC_Os01g08710OsAffx.23164.1.S1_x_at9/111+4337651..4353270WRKY DNA binding domain containing protein, expressed
LOC_Os01g08710OsAffx.23164.1.S1_at8/111+4337651..4353270WRKY DNA binding domain containing protein, expressed
LOC_Os01g08720NANA1+4354526..4357857transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g08730Os.47463.1.S1_x_at6/111+4359930..4363629transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g08730Os.14491.2.S1_x_at5/111+4359930..4363629transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g08740OsAffx.10971.1.S1_at2/111+4365540..4366067hypothetical protein
LOC_Os01g08750OsAffx.10972.1.S1_x_at11/111+4370952..4390222expressed protein
LOC_Os01g08750Os.25107.1.S1_at11/111+4370952..4390222expressed protein
LOC_Os01g08750OsAffx.10972.2.S1_x_at11/111+4370952..4390222expressed protein
LOC_Os01g08750OsAffx.10972.1.S1_at11/111+4370952..4390222expressed protein
LOC_Os01g08750Os.505.1.S1_x_at11/111+4370952..4390222expressed protein
LOC_Os01g08760OsAffx.10973.2.S1_s_at11/111+4391956..4393960Choline/ethanolamine kinase family protein, expressed
LOC_Os01g08760OsAffx.10973.1.S1_s_at11/111+4391956..4393960Choline/ethanolamine kinase family protein, expressed
LOC_Os01g08760OsAffx.10973.1.S1_x_at11/111+4391956..4393960Choline/ethanolamine kinase family protein, expressed
LOC_Os01g08760OsAffx.10973.2.S1_at10/111+4391956..4393960Choline/ethanolamine kinase family protein, expressed
LOC_Os01g08770Os.17792.1.S1_at11/111+4394454..4398744WD-repeat protein 46, putative, expressed
LOC_Os01g08780Os.29290.1.S1_at10/111+4399470..4404094inositol-1,4,5-trisphosphate 5-Phosphatase, putative, expressed
LOC_Os01g08790OsAffx.23165.1.S1_x_at11/111+4412218..4412934Histone-like transcription factor and archaeal histone family protein
LOC_Os01g08800OsAffx.21912.1.S1_at11/111+4414085..4415729Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.505.1.S1_x_at--171--8391Chr01:4373483..4373507 (25 bp)
GGCCAAGTGGTTTCAGTACTACAAC
LOC_Os01g08750
Os.505.1.S1_x_at--818--7871Chr01:4373522..4373546 (25 bp)
GGTTAGCTTACCCTGATACAATGGC
LOC_Os01g08750
Os.505.1.S1_x_at--891--1451Chr01:4373563..4373587 (25 bp)
AGAAGAGTGATCCTTCCACCATGCA
LOC_Os01g08750
Os.505.1.S1_x_at--465--351Chr01:4373602..4373626 (25 bp)
ATAATTAGCCTCTCACCATTTGGGT
LOC_Os01g08750
Os.505.1.S1_x_at--504--9651Chr01:4373760..4373784 (25 bp)
TCAGAAGGACTCTACTTTTACCGGA
LOC_Os01g08750
Os.505.1.S1_x_at--156--10351Chr01:4373776..4373800 (25 bp)
TTTACCGGAGAGTGTGTCCTTTGCT
LOC_Os01g08750
Os.505.1.S1_x_at--885--7251Chr01:4373791..4373815 (25 bp)
GTCCTTTGCTCCTTTCAGGGATATG
LOC_Os01g08750
Os.505.1.S1_x_at--615--6491Chr01:4373833..4373857 (25 bp)
GATAGCCTTTCTGTGGTTCTTCCAT
LOC_Os01g08750
Os.505.1.S1_x_at--219--10551Chr01:4373868..4373892 (25 bp)
TTCATCCTTTTCATCTCACAACAAT
LOC_Os01g08750
Os.505.1.S1_x_at--834--2231Chr01:4373899..4373923 (25 bp)
AAATTTTGGCAACCGACTTCTGCTG
LOC_Os01g08750
Os.505.1.S1_x_at--200--3531Chr01:4373933..4373957 (25 bp)
CATGCGATGCTCTGAATTTGTCCTC
LOC_Os01g08750
Target Sequence 
GGCCAAGTGGTTTCAGTACTACAACACCGATGAAAGATGGGTTAGCTTACCCTGATACAATGGCAGTTTCCAATCCATTA
AGAAGAGTGATCCTTCCACCATGCAGATTACAGGAGAATATAATTAGCCTCTCACCATTTGGGTTAACGAGAATCTTTAA
AAGTCACAATGCGGATGGAAACAAGCATTTTAGAATTGTTCACACAAACTTTCTTATGGCTTCATTACACCTTGATGAGA
GGGATATTGATGCTAGTTTCCTTAAAAGGTCCTCATTTCAGAAGGACTCTACTTTTACCGGAGAGTGTGTCCTTTGCTCC
TTTCAGGGATATGTGTATCTGATTACCCAGGATAGCCTTTCTGTGGTTCTTCCATCAATTTCTGTTTCATCCTTTTCATC
TCACAACAATGGCATCAAATTTTGGCAACCGACTTCTGCTGGTGGTAGTGCATGCGATGCTCTGAATTTGTCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.505.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis