Browse Element(s) Details


Os.50543.1.S1_x_at

Description gb:AK121713.1
DB_XREF= gi:37991336
TID=Os.50543.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50543 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033078K24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033078K24, full insert sequence.
FL= gb:AK121713.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4603011/11expressed protein
LOC_Os06g293501/11myosin, putative, expressed
LOC_Os01g516301/11Myosin head family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45990Os.54962.1.S1_at10/115+26576315..26578190F-box domain containing protein, expressed
LOC_Os05g46000Os.54425.1.S1_at11/115+26581348..26583292Ras-related protein Rab7, putative, expressed
LOC_Os05g46000Os.40181.2.S1_s_at2/115+26581348..26583292Ras-related protein Rab7, putative, expressed
LOC_Os05g46010Os.14919.1.S1_at4/115+26586138..26590038hypothetical protein
LOC_Os05g46010OsAffx.29313.1.S1_at1/115+26586138..26590038hypothetical protein
LOC_Os05g46020Os.8961.1.S1_s_at11/115+26599203..26600883WRKY DNA binding domain containing protein, expressed
LOC_Os05g46030Os.50543.1.S1_x_at11/115+26602710..26621489expressed protein
LOC_Os05g46030OsAffx.27335.1.S1_x_at11/115+26602710..26621489expressed protein
LOC_Os05g46040Os.18094.2.S1_a_at11/115+26621897..26624551Protein phosphatase 2C ABI2, putative, expressed
LOC_Os05g46050Os.54851.1.S1_at11/115+26631240..26632756F-box domain containing protein, expressed
LOC_Os05g46060OsAffx.4632.2.S1_at11/115+26633993..26635219F-box domain containing protein
LOC_Os05g46070OsAffx.1407.1.S1_at3/115+26637834..26638620hAT dimerisation domain-containing protein, putative
LOC_Os05g46070Os.55414.1.S1_at2/115+26637834..26638620hAT dimerisation domain-containing protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0030048biological_processactin filament-based movement
GO:0005777cellular_componentperoxisome
GO:0016459cellular_componentmyosin
GO:0016461cellular_componentunconventional myosin
GO:0003774molecular_functionmotor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50543.1.S1_x_at--260--10691Chr05:26605801..26605825 (25 bp)
TTGCATTTTTGGGTGGACGGTCTAG
LOC_Os05g46030
Os.50543.1.S1_x_at--180--4332Chr06:16774544..16774568 (25 bp)
CCAGTCCTTGAAGCTTTTGGCAATG
LOC_Os06g29350
Os.50543.1.S1_x_at--790--3891Chr05:26606358..26606382 (25 bp)
CTGGTGCTGCCATTAGAACATACTT
LOC_Os05g46030
Os.50543.1.S1_x_at--616--7271Chr05:26606415..26606439 (25 bp)
GTCCAGAGAGAAACTACCATTGCTT
LOC_Os05g46030
Os.50543.1.S1_x_at--985--1732Chr05:26606430..26606454 (25 bp)
ACCATTGCTTTTACTTCCTATGTGC
LOC_Os05g46030
Os.50543.1.S1_x_at--305--10111Chr05:26606448..26606468 (21 bp)
TATGTGCAGCACCATCGGAGGAAAT
LOC_Os05g46030
Os.50543.1.S1_x_at--742--6871Chr05:26606552..26606576 (25 bp)
GTATAATCTGGGTGACCCTTCGTCG
LOC_Os05g46030
Os.50543.1.S1_x_at--407--10331Chr05:26606577..26606601 (25 bp)
TTTCACTATCTCAACCAATCTACTT
LOC_Os05g46030
Os.50543.1.S1_x_at--548--3691Chr05:26606804..26606828 (25 bp)
CTATATTCCGAGTTGTTGCTGCTGT
LOC_Os05g46030
Os.50543.1.S1_x_at--287--3891Chr05:26606825..26606849 (25 bp)
CTGTGCTTCACCTTGGGAACATCAA
LOC_Os05g46030
Os.50543.1.S1_x_at--334--7911Chr05:26606903..26606927 (25 bp)
GGTTCCATCTTAATGCAGCTGCAGA
LOC_Os05g46030
Target Sequence 
TTGCATTTTTGGGTGGACGGTCTAGAACAGGAGGGAGGACAGTTGAACAACAAGTTTTAGAATCTAATCCAGTCCTTGAA
GCTTTTGGCAATGCAAAGACTGTTCGGAACAATAATTCAAGCCGGTTTGGCAAATTTGTTGAAATCCAGTTTGACAAGAG
TGGGAAGATATCTGGTGCTGCCATTAGAACATACTTACTTGAAAGATCACGTGTTTGTCAAATCAATAGTCCAGAGAGAA
ACTACCATTGCTTTTACTTCCTATGTGCAGCACCATCGGAGGAAATTAGAAAGTATAATCTGGGTGACCCTTCGTCGTTT
CACTATCTCAACCAATCTACTTGCATTAAAGTTGATGGGATTAGTGACAATGAGGAGTATCTTGCAACAAGAAGTGCTAT
GAATACAGTTGGCATAACTGAGCAGGAGCAGGAGGCTATATTCCGAGTTGTTGCTGCTGTGCTTCACCTTGGGAACATCA
ATTTTGTGAAAGGGAGAGAGGTAGATTCATCTGTAATAAAGGATGAGAAAGCTAGGTTCCATCTTAATGCAGCTGCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50543.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis