Browse Element(s) Details


Os.50578.1.S1_at

Description gb:AK070683.1
DB_XREF= gi:32980707
TID=Os.50578.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50578 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023062D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023062D08, full insert sequence.
FL= gb:AK070683.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2023911/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g20170Os.23970.1.S1_at11/1111+11638865..11640337expressed protein
LOC_Os11g20180NANA11+11643740..11644781hypothetical protein
LOC_Os11g20190NANA11+11646862..11648176retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g20200OsAffx.22946.1.S1_at3/1111+11650759..11653064retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g20210NANA11+11653648..11653989retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g20220NANA11+11654314..11657771retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g20239Os.50578.1.S1_at11/1111+11663061..11683420expressed protein
LOC_Os11g20239Os.50578.1.S1_x_at11/1111+11663061..11683420expressed protein
LOC_Os11g20239Os.50578.2.S1_x_at11/1111+11663061..11683420expressed protein
LOC_Os11g20239Os.50578.2.S1_at11/1111+11663061..11683420expressed protein
LOC_Os11g20239Os.36393.1.S1_at3/1111+11663061..11683420expressed protein
LOC_Os11g20239Os.46050.1.A1_x_at1/1111+11663061..11683420expressed protein
LOC_Os11g20239Os.11220.1.S1_at1/1111+11663061..11683420expressed protein
LOC_Os11g20239Os.25740.1.S1_at1/1111+11663061..11683420expressed protein
LOC_Os11g20239Os.26930.1.S1_x_at1/1111+11663061..11683420expressed protein
LOC_Os11g20239Os.36149.1.S1_x_at1/1111+11663061..11683420expressed protein
LOC_Os11g20260OsAffx.22516.1.S1_at2/1111+11683050..11687219retrotransposon protein, putative, unclassified
LOC_Os11g20260Os.49233.1.S1_at1/1111+11683050..11687219retrotransposon protein, putative, unclassified
LOC_Os11g20270NANA11+11687790..11689952retrotransposon protein, putative, unclassified
LOC_Os11g20280NANA11+11696259..11696621hypothetical protein
LOC_Os11g20290NANA11+11700854..11706670retrotransposon protein, putative, unclassified
LOC_Os11g20300Os.31312.1.S1_at8/1111+11706992..11710514retrotransposon protein, putative, unclassified
LOC_Os11g20300Os.31312.5.S1_x_at5/1111+11706992..11710514retrotransposon protein, putative, unclassified
LOC_Os11g20300Os.31312.2.S1_x_at4/1111+11706992..11710514retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50578.1.S1_at--201--10631Chr11:11663650..11663674 (25 bp)
TTCGTTAGACGTACATAGAAGTGTC
LOC_Os11g20239
Os.50578.1.S1_at--300--5771Chr11:11663643..11663667 (25 bp)
GACGTACATAGAAGTGTCGGGTCAC
LOC_Os11g20239
Os.50578.1.S1_at--803--1891Chr11:11663642..11663666 (25 bp)
ACGTACATAGAAGTGTCGGGTCACA
LOC_Os11g20239
Os.50578.1.S1_at--871--9871Chr11:11663640..11663663 (24 bp)
TACATAGAAGTGTCGGGTCACAGGC
LOC_Os11g20239
Os.50578.1.S1_at--1156--3471Chr11:11663475..11663499 (25 bp)
CAGGATGGATTCGATCGGATCGATA
LOC_Os11g20239
Os.50578.1.S1_at--161--1151Chr11:11663199..11663223 (25 bp)
AGTCAATTGGACCAACCAACCAACA
LOC_Os11g20239
Os.50578.1.S1_at--186--5851Chr11:11663198..11663222 (25 bp)
GTCAATTGGACCAACCAACCAACAC
LOC_Os11g20239
Os.50578.1.S1_at--514--6171Chr11:11663118..11663142 (25 bp)
GAGGAAGTATATCTTTAGGCCGTGT
LOC_Os11g20239
Os.50578.1.S1_at--515--8191Chr11:11663116..11663140 (25 bp)
GGAAGTATATCTTTAGGCCGTGTTT
LOC_Os11g20239
Os.50578.1.S1_at--1099--5331Chr11:11663115..11663139 (25 bp)
GAAGTATATCTTTAGGCCGTGTTTA
LOC_Os11g20239
Os.50578.1.S1_at--678--2831Chr11:11663114..11663138 (25 bp)
AAGTATATCTTTAGGCCGTGTTTAG
LOC_Os11g20239
Target Sequence 
TTCGTTAGACGTACATAGAAGTGTCGGGTCACAGGCATACGAGGAGTTGAAATCTTCCGTTCAGGATGGATTCGATCGGA
TCGATAAGATTTTGCCTACCATATCAGATTTCGTCGACATAAGCACCATGCAAACTGCTATTCACGCATCTAACCTATTC
AAGAGAGCTTTCAAGACTAATATTACAGTGGCAGTTAAGATAGTGATAAGGGCAGCAATAACGAAAGTTATTGATACCAT
TGAGGATATACAAGGGCCTCTCCATCCATGGGGAGACACAACTGCCATGGGATACCACACACCCACAAACTACTCCACAC
ATGCTACAAAAGATGCTAGTCAATTGGACCAACCAACCAACACGGTCAAACGTTAAACGTTAAACGTGAATAGTGTAAAA
CTGCACTTATTTTGGATGGAGGAAGTATATCTTTAGGCCGTGTTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50578.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis