Browse Element(s) Details


Os.50591.1.S1_at

Description gb:AK101793.1
DB_XREF= gi:32987002
TID=Os.50591.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50591 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033065K23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033065K23, full insert sequence.
FL= gb:AK101793.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3333011/11expressed protein
LOC_Os05g343503/11transposon protein, putative, unclassified
LOC_Os07g386703/11hypothetical protein
LOC_Os10g220301/11retrotransposon protein, putative, unclassified, expressed
LOC_Os10g346801/11Vps52/Sac2 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33390Os.5186.1.S1_at11/114+19982191..19983852prephenate dehydratase family protein, expressed
LOC_Os04g33390OsAffx.29486.2.S1_x_at1/114+19982191..19983852prephenate dehydratase family protein, expressed
LOC_Os04g33390Os.36927.2.S1_x_at1/114+19982191..19983852prephenate dehydratase family protein, expressed
LOC_Os04g33330Os.50591.2.S1_x_at11/114+19999435..20002011expressed protein
LOC_Os04g33330Os.50591.1.S1_at11/114+19999435..20002011expressed protein
LOC_Os04g33340OsAffx.26306.1.S1_s_at11/114+20002945..20003596hypothetical protein
LOC_Os04g33340OsAffx.26306.2.S1_at5/114+20002945..20003596hypothetical protein
LOC_Os04g33350Os.52915.1.S1_at4/114+20008218..20008718hypothetical protein
LOC_Os04g33350OsAffx.12985.3.S1_x_at1/114+20008218..20008718hypothetical protein
LOC_Os04g33360Os.52990.2.S1_at11/114+20013242..20014493oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os04g33370NANA4+20023956..20025929Cytochrome P450 77A2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009860biological_processpollen tube growth
GO:0005794cellular_componentGolgi apparatus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50591.1.S1_at--798--58116Chr10:18161177..18161197 (21 bp)
GACCCACCCTGCCTAATGGGTGTGT
LOC_Os10g34680
Os.50591.1.S1_at--742--3735Chr09:22627864..22627886 (23 bp)
CTAATGGGTGTGTCCGCCACTGAGT
NONE
Os.50591.1.S1_at--664--8671Chr04:19999856..19999880 (25 bp)
TGTGTCCGCCACTGAGTGGATGCAT
LOC_Os04g33330
Os.50591.1.S1_at--820--7511Chr04:19999841..19999865 (25 bp)
GTGGATGCATATGCTATCTACAGCT
LOC_Os04g33330
Os.50591.1.S1_at--337--451Chr04:19999826..19999850 (25 bp)
ATCTACAGCTTATTCAACTTAGCTT
LOC_Os04g33330
Os.50591.1.S1_at--226--2531Chr04:19999811..19999835 (25 bp)
AACTTAGCTTTTTATATCTCACACT
LOC_Os04g33330
Os.50591.1.S1_at--1096--67316Chr11:14451062..14451086 (25 bp)
GTTCATTGAGTGACTTTCAGGTGCA
NONE
Os.50591.1.S1_at--983--61134Chr12:17726035..17726054 (20 bp)
GAGTGACTTTCAGGTGCATTAGTCC
NONE
Os.50591.1.S1_at--430--30757Chr12:14083368..14083489 (25 bp)
AATCATTTCAGGTGCATTAGTCCAA
NONE
Os.50591.1.S1_at--356--54320Chr11:14115299..14115386 (25 bp)
GAACCAAGTGTCAAGTTTCTCTAGG
NONE
Os.50591.1.S1_at--9--7092Chr07:23222188..23222212 (25 bp)
GTCAAGTTTCTCTAGGAGTCATTTT
NONE
Target Sequence 
GACCCACCCTGCCTAATGGGTGTGTCCGCCACTGAGTGGATGCATATGCTATCTACAGCTTATTCAACTTAGCTTTTTAT
ATCTCACACTAAAAGTGCATTAATCCCCCTAGTGGGTTTTGGTGATTAATGACAAATGTGGTTAAGGGACTAATGAGTTC
ATTGAGTGACTTTCAGGTGCATTAGTCCAAGGTGTGGAAGATGGATGCTTGGAGACCCCTCCAAAAGTACAAAATCATTT
CAGGTGCATTAGTCCAAGGTGTGGAAGATGGATGCTTGGAGACCCCTCCAAAAGTACAAAATCAAAGCGGACCGGAACTC
GAGAAGTGCATAGGATAGTTTATCTATTGAAATCGAGTTTTTAGGAAAAACCGTACTATTAAGAGGGGTTCCAGGTGATG
CTCTGAGATATGTCAAGTGCTCTTAGTGTGAACCAAGTGTCAAGTTTCTCTAGGAGTCATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50591.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis