Browse Element(s) Details


Os.50593.1.S1_at

Description gb:AK064548.1
DB_XREF= gi:32974566
TID=Os.50593.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50593 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-112-B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-112-B08, full insert sequence.
FL= gb:AK064548.1 gb:AK121990.1 gb:AK064402.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3847010/11B3 DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38410OsAffx.24631.1.S1_at11/112+23222914..23224983ubiquitin family protein, putative, expressed
LOC_Os02g38410OsAffx.24631.1.S1_s_at11/112+23222914..23224983ubiquitin family protein, putative, expressed
LOC_Os02g38420OsAffx.2906.1.S1_at11/112+23229574..23230095hypothetical protein
LOC_Os02g38420OsAffx.22604.1.S1_x_at1/112+23229574..23230095hypothetical protein
LOC_Os02g38430Os.47575.1.S1_at11/112+23231286..23235548expressed protein
LOC_Os02g38430Os.20406.3.S1_x_at1/112+23231286..23235548expressed protein
LOC_Os02g38430Os.50575.2.S1_x_at1/112+23231286..23235548expressed protein
LOC_Os02g38440Os.5903.1.A1_at10/112+23235758..23238754oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g38450NANA2+23240648..23241168hypothetical protein
LOC_Os02g38460Os.2987.3.S1_x_at2/112+23245931..23248303retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g38470Os.50593.1.S2_at11/112+23249218..23256428B3 DNA binding domain containing protein, expressed
LOC_Os02g38470Os.50593.1.S1_at10/112+23249218..23256428B3 DNA binding domain containing protein, expressed
LOC_Os02g38480Os.26372.1.S1_s_at11/112+23259034..23266080expressed protein
LOC_Os02g38490Os.56188.1.S1_at11/112+23266654..23267437expressed protein
LOC_Os02g38499Os.54542.1.S1_at11/112+23280102..23281397F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50593.1.S1_at--27--7671Chr02:23254543..23254567 (25 bp)
GGGATGCATCATTCGTTCAACCTGA
LOC_Os02g38470
Os.50593.1.S1_at--1032--8131Chr02:23254513..23254537 (25 bp)
GGACAGCTCAGACATTTAGCACTAA
LOC_Os02g38470
Os.50593.1.S1_at--746--5291Chr02:23254470..23254494 (25 bp)
GAAGGCGCCATCTACACCATTGAAG
LOC_Os02g38470
Os.50593.1.S1_at--229--5571Chr02:23254329..23254353 (25 bp)
GAAAGCAGCCTTCGCATTCTTCAAA
LOC_Os02g38470
Os.50593.1.S1_at--623--9551Chr02:23254312..23254336 (25 bp)
TCTTCAAATTTGTGCGCGACGAGTT
LOC_Os02g38470
Os.50593.1.S1_at--983--5211NONE
GAATTACTGTTCATACCACCAGCAG
NONE
Os.50593.1.S1_at--1059--3291Chr02:23253384..23253408 (25 bp)
CAGTTGCACCCAGCCTTAAGGATTT
LOC_Os02g38470
Os.50593.1.S1_at--7--8011Chr02:23253293..23253317 (25 bp)
GGATGGTTCCCTAGCTTTTTATGAG
LOC_Os02g38470
Os.50593.1.S1_at--992--7991Chr02:23253268..23253292 (25 bp)
GGATGGAACAGTTTCGTTTCAGAAC
LOC_Os02g38470
Os.50593.1.S1_at--226--5251Chr02:23253199..23253223 (25 bp)
GAATCAACATTTTCTGTGCGGGTGT
LOC_Os02g38470
Os.50593.1.S1_at--110--3891Chr02:23253186..23253210 (25 bp)
CTGTGCGGGTGTTTGGTATTGATTC
LOC_Os02g38470
Target Sequence 
GGGATGCATCATTCGTTCAACCTGATGAGAGGACAGCTCAGACATTTAGCACTAAAAACAAGGAAAAGAAGAGGAAGGCG
CCATCTACACCATTGAAGAGGGAGCAGAAGGAGCGAGTGGCTAGCAGTGACAATAAAAAGGAGACGAAGAAGGCTTGTAT
TGTTGCTATAGGAAATGAGAAAAAAAATTGTAGGGATGGCAAGAAGAAGAAAAGGAAAGCAGCCTTCGCATTCTTCAAAT
TTGTGCGCGACGAGTTCGAGGAATTACTGTTCATACCACCAGCAGTTGCACCCAGCCTTAAGGATTTAATTGATCGCCAT
GTATATCNTGAAGACTCAGAGGGGAAGTGTTCAAAGATCAGGCTATCGGTGGTGGATGGTTCCCTAGCTTTTTATGAGGG
ATGGAACAGTTTCGTTTCAGAACATTGTATTAAGTGGGGTGAATTTCTATTATTTGAGTACACACCAGAATCAACATTTT
CTGTGCGGGTGTTTGGTATTGATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50593.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis