Browse Element(s) Details


Os.50599.1.S1_x_at

Description gb:AK122006.1
DB_XREF= gi:37991629
TID=Os.50599.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50599 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033110O17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033110O17, full insert sequence.
FL= gb:AK122006.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4635010/11Homeobox associated leucine zipper family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46310OsAffx.14296.1.S1_at11/114+27225370..27240995HEAT repeat family protein, expressed
LOC_Os04g46310Os.24616.1.S1_s_at11/114+27225370..27240995HEAT repeat family protein, expressed
LOC_Os04g46310Os.24616.1.S2_at10/114+27225370..27240995HEAT repeat family protein, expressed
LOC_Os04g46320Os.50904.1.S1_at11/114+27241763..27244397Protein kinase domain containing protein, expressed
LOC_Os04g46330Os.51735.1.S1_s_at11/114+27247252..27248767expressed protein
LOC_Os04g46330Os.51735.1.S1_at10/114+27247252..27248767expressed protein
LOC_Os04g46340OsAffx.4106.1.S1_at11/114+27252261..27254789hypothetical protein
LOC_Os04g46340OsAffx.4106.1.S1_x_at11/114+27252261..27254789hypothetical protein
LOC_Os04g46340OsAffx.32242.1.S1_at1/114+27252261..27254789hypothetical protein
LOC_Os04g46350OsAffx.4107.1.S1_s_at11/114+27258493..27260624Homeobox associated leucine zipper family protein, expressed
LOC_Os04g46350Os.50599.1.S1_x_at10/114+27258493..27260624Homeobox associated leucine zipper family protein, expressed
LOC_Os04g46350Os.20628.1.S1_at1/114+27258493..27260624Homeobox associated leucine zipper family protein, expressed
LOC_Os04g46360OsAffx.28186.2.S1_x_at1/114+27267833..27268693hypothetical protein
LOC_Os04g46370Os.27114.1.S1_at10/114+27275382..27278873L-asparaginase, putative, expressed
LOC_Os04g46380Os.57184.1.S1_at11/114+27279015..27279649expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009735biological_processresponse to cytokinin stimulus
GO:0040029biological_processregulation of gene expression, epigenetic
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50599.1.S1_x_at--691--7471Chr04:27259805..27259829 (25 bp)
GTGTGGTTTCAGAACAGACGCGCAA
LOC_Os04g46350
Os.50599.1.S1_x_at--640--1391NONE
AGACGCGCAAGGACGAAGCTGAAGC
NONE
Os.50599.1.S1_x_at--116--9051Chr04:27259521..27259545 (25 bp)
TGCAGGAGCTGCGAGCGCTCAAGCT
LOC_Os04g46350
Os.50599.1.S1_x_at--401--3931Chr04:27259285..27259309 (25 bp)
CGGCCGCAGCAGTCATGACAAGCTA
LOC_Os04g46350
Os.50599.1.S1_x_at--480--1551Chr04:27259265..27259289 (25 bp)
AGCTAGCTAGCTTTTTACTTCCTAG
LOC_Os04g46350
Os.50599.1.S1_x_at--1031--9991Chr04:27259243..27259267 (25 bp)
TAGCTAGACAGACTACACCCGTACA
LOC_Os04g46350
Os.50599.1.S1_x_at--275--9311Chr04:27259215..27259239 (25 bp)
TCCCCATGTGTCAACGAGGCAGCAA
LOC_Os04g46350
Os.50599.1.S1_x_at--743--5051Chr04:27259197..27259221 (25 bp)
GCAGCAAGCAGTGTACGTGCACATT
LOC_Os04g46350
Os.50599.1.S1_x_at--489--9031Chr04:27259180..27259204 (25 bp)
TGCACATTATATTCGCGCAAGCTGT
LOC_Os04g46350
Os.50599.1.S1_x_at--1157--2671Chr04:27259162..27259186 (25 bp)
AAGCTGTGTGTGTTGCGCTCACCGA
LOC_Os04g46350
Os.50599.1.S1_x_at--248--9251Chr04:27259113..27259137 (25 bp)
TCCTTTTTGTTGGAAGCAGCTAGCT
LOC_Os04g46350
Target Sequence 
GTGTGGTTTCAGAACAGACGCGCAAGGACGAAGCTGAAGCAGACGGAGGTGGACTGCGAGTTCCTGAAGCGCTGCTGCGA
GACGCTCACGGAGGAGAACCGGAGGCTGCAGAAGGAGGTGCAGGAGCTGCGAGCGCTCAAGCTCGTCTCGCCGCACCTCT
ACATGAACATGTCCCCGCCCACCACGCTCACCATGTGCCCCTCCTGCGAGCGCGTCTCCAACACCAATAACAACTCCAGC
GCCGCCGCCGCCGCCGACCGCCGCGGCATCAGGACTACTACTGCCGCAGGCGGCGGCAGCGTCGTCGACACCGCCGCCGA
CGGGGGCATCCTCTGCCACCGCCCGATCGCCGTCCGGCCGCAGCAGTCATGACAAGCTAGCTAGCTTTTTACTTCCTAGC
TAGACAGACTACACCCGTACACTGTCCCCATGTGTCAACGAGGCAGCAAGCAGTGTACGTGCACATTATATTCGCGCAAG
CTGTGTGTGTTGCGCTCACCGATCGATCGCTCAGTTGTTGTTTTTTTCCTTTTTGTTGGAAGCAGCTAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50599.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis