Browse Element(s) Details


Os.50609.1.S1_at

Description gb:AK122068.1
DB_XREF= gi:37991714
TID=Os.50609.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50609 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033117G13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033117G13, full insert sequence.
FL= gb:AK122068.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0854010/11MutS domain III family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08510Os.36975.3.S1_x_at11/111+4205373..4210104MAR binding filament-like protein 1, putative, expressed
LOC_Os01g08520Os.23583.1.S1_at11/111+4211840..4214349expressed protein
LOC_Os01g08520Os.23583.2.S1_x_at11/111+4211840..4214349expressed protein
LOC_Os01g08530NANA1+4228902..4230362transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g08540Os.46027.1.S1_x_at11/111+4231375..4241333MutS domain III family protein, expressed
LOC_Os01g08540Os.50609.1.S1_at10/111+4231375..4241333MutS domain III family protein, expressed
LOC_Os01g08550Os.23665.1.A1_at11/111+4242248..4246549expressed protein
LOC_Os01g08560Os.5504.1.S2_at11/111+4250647..4256427dnaK protein, expressed
LOC_Os01g08560Os.5504.1.S1_at11/111+4250647..4256427dnaK protein, expressed
LOC_Os01g08560Os.50414.1.S1_at1/111+4250647..4256427dnaK protein, expressed
LOC_Os01g08570OsAffx.23162.2.S1_at11/111+4261049..4266936oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os01g08570OsAffx.23162.1.S1_x_at11/111+4261049..4266936oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os01g08570OsAffx.23162.1.S1_at6/111+4261049..4266936oxidoreductase, 2OG-Fe oxygenase family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006298biological_processmismatch repair
GO:0003684molecular_functiondamaged DNA binding
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50609.1.S1_at--267--5891Chr01:4231548..4231572 (25 bp)
GAGCGTTGAGCGGTCAGCACTAACC
LOC_Os01g08540
Os.50609.1.S1_at--342--7111Chr01:4231536..4231560 (25 bp)
GTCAGCACTAACCATCACTAATTAT
LOC_Os01g08540
Os.50609.1.S1_at--915--2971Chr01:4231510..4231534 (25 bp)
AATGTTTATATCCATGTAAGTGCCA
LOC_Os01g08540
Os.50609.1.S1_at--881--751Chr01:4231497..4231521 (25 bp)
ATGTAAGTGCCATCTTTTGCGTGTC
LOC_Os01g08540
Os.50609.1.S1_at--932--10271Chr01:4231482..4231506 (25 bp)
TTTGCGTGTCCGGTGTTATCTTTTA
LOC_Os01g08540
Os.50609.1.S1_at--1071--7451Chr01:4231477..4231501 (25 bp)
GTGTCCGGTGTTATCTTTTATTATG
LOC_Os01g08540
Os.50609.1.S1_at--201--6811Chr01:4231441..4231465 (25 bp)
GTTTTTAATTGATGGCTCTAGTTCT
LOC_Os01g08540
Os.50609.1.S1_at--861--6231Chr01:4231431..4231455 (25 bp)
GATGGCTCTAGTTCTGTATATATAC
LOC_Os01g08540
Os.50609.1.S1_at--888--8711Chr01:4231402..4231426 (25 bp)
TGTCGTATACTCAATCAGAGCTATA
LOC_Os01g08540
Os.50609.1.S1_at--345--5911Chr01:4231385..4231409 (25 bp)
GAGCTATAGTAATCTGGCCTGTTTG
LOC_Os01g08540
Os.50609.1.S1_at--436--3051Chr01:4231375..4231399 (25 bp)
AATCTGGCCTGTTTGACTGAAGCTC
NONE
Target Sequence 
GAGCGTTGAGCGGTCAGCACTAACCATCACTAATTATCAATGTTTATATCCATGTAAGTGCCATCTTTTGCGTGTCCGGT
GTTATCTTTTATTATGGNTAATCAGGNGTTTTTAATTGATGGCTCTAGTTCTGTATATATACAGTATGTCGTATACTCAA
TCAGAGCTATAGTAATCTGGCCTGTTTGACTGAAGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50609.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis