Browse Element(s) Details


Os.50618.3.S1_at

Description gb:AK073674.1
DB_XREF= gi:32983697
TID=Os.50618.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.50618 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033056B13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033047B15, full insert sequence.
FL= gb:AK073674.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4073011/11Helicase conserved C-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40690Os.46924.1.S1_at11/117+24382713..24384966NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g40700Os.35300.1.S1_at10/117+24387459..24391897tRNA/rRNA methyltransferase, putative, expressed
LOC_Os07g40710Os.14803.1.S1_at11/117+24394455..24399093circadian clock coupling factor, putative, expressed
LOC_Os07g40710OsAffx.5588.1.A1_at11/117+24394455..24399093circadian clock coupling factor, putative, expressed
LOC_Os07g40710OsAffx.1471.1.S1_x_at1/117+24394455..24399093circadian clock coupling factor, putative, expressed
LOC_Os07g40710OsAffx.1471.1.S1_at1/117+24394455..24399093circadian clock coupling factor, putative, expressed
LOC_Os07g40730Os.50618.1.S1_at11/117+24401672..24414935Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g40730Os.50618.3.S1_at11/117+24401672..24414935Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g40730Os.50618.2.S1_x_at10/117+24401672..24414935Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g40730Os.50618.2.S1_at10/117+24401672..24414935Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g40740Os.53364.1.S1_at11/117+24415688..24417746Heparanase-like protein 1 precursor, putative, expressed
LOC_Os07g40750Os.53545.1.S1_at11/117+24418192..24420620pentatricopeptide, putative, expressed
LOC_Os07g40760OsAffx.32289.1.S1_at1/117+24421050..24426782transposon protein, putative, Mutator sub-class
LOC_Os07g40770OsAffx.16658.1.S1_at11/117+24427608..24431841expressed protein
LOC_Os07g40770Os.46451.1.S1_at1/117+24427608..24431841expressed protein
LOC_Os07g40780OsAffx.16659.1.S1_at11/117+24437157..24438428Zinc finger, C2H2 type family protein, expressed
LOC_Os07g40780OsAffx.27050.1.S1_x_at1/117+24437157..24438428Zinc finger, C2H2 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009908biological_processflower development
GO:0016585cellular_componentchromatin remodeling complex
GO:0003676molecular_functionnucleic acid binding
GO:0003677molecular_functionDNA binding
GO:0003682molecular_functionchromatin binding
GO:0004386molecular_functionhelicase activity
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50618.3.S1_at--211--6431Chr07:24414522..24414546 (25 bp)
GATAAGTCGTTGCTTGTCGTTGTCC
LOC_Os07g40730
Os.50618.3.S1_at--454--10811Chr07:24414535..24414559 (25 bp)
TTGTCGTTGTCCCTGGTAGTGCCTA
LOC_Os07g40730
Os.50618.3.S1_at--1104--1071Chr07:24414552..24414576 (25 bp)
AGTGCCTACTCCTGAGTTGGGTAGC
LOC_Os07g40730
Os.50618.3.S1_at--42--6971Chr07:24414572..24414596 (25 bp)
GTAGCGTGGTTCTGGCTAGAGCATA
LOC_Os07g40730
Os.50618.3.S1_at--314--6951Chr07:24414602..24414626 (25 bp)
GTAGATTACAGTTGGACATTCTTCC
LOC_Os07g40730
Os.50618.3.S1_at--614--8131Chr07:24414615..24414639 (25 bp)
GGACATTCTTCCAAAGGGCACCAAT
LOC_Os07g40730
Os.50618.3.S1_at--751--6591Chr07:24414672..24414696 (25 bp)
GATTGCAATTGCACTCATGCATTAT
LOC_Os07g40730
Os.50618.3.S1_at--624--6411Chr07:24414703..24414727 (25 bp)
GATCTGCAACCGTCTTCTGTTTAGT
LOC_Os07g40730
Os.50618.3.S1_at--408--10351Chr07:24414798..24414822 (25 bp)
TTTTTACCCACACGAAACATTGGAG
LOC_Os07g40730
Os.50618.3.S1_at--158--1971Chr07:24414824..24414848 (25 bp)
ACTGCCACATGTTTGTTTGGGAACT
LOC_Os07g40730
Os.50618.3.S1_at--632--8151Chr07:24414910..24414934 (25 bp)
GGAAATGCTTGTTGGGATGATCTAT
LOC_Os07g40730
Target Sequence 
GATAAGTCGTTGCTTGTCGTTGTCCCTGGTAGTGCCTACTCCTGAGTTGGGTAGCGTGGTTCTGGCTAGAGCATATGTAT
GTAGATTACAGTTGGACATTCTTCCAAAGGGCACCAATATTTTGTGCATATATTTGTTGCGTGTGGCCAAGATTGCAATT
GCACTCATGCATTATGATTGCGATCTGCAACCGTCTTCTGTTTAGTCGGGGCGGCATTTTGGGCTGTGTAAGGAATGGTT
GTGAAAGAAGAAAGGAAATGTCAATTTTGTTTTCAGTTTTTACCCACACGAAACATTGGAGAACTGCCACATGTTTGTTT
GGGAACTTTTTTATTTTTAATTTTATTAATAGACTTTTACAAAAAAAACATTTCCAAGGTTCAGATTTGGAAATGCTTGT
TGGGATGATCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50618.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis