Browse Element(s) Details


Os.50623.1.S1_at

Description gb:AK122170.1
DB_XREF= gi:37991816
TID=Os.50623.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50623 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033148D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033148D12, full insert sequence.
FL= gb:AK122170.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1106010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g10990Os.11679.1.S1_a_at11/1110+5846058..5853917mutant TFIIF-alpha, putative, expressed
LOC_Os10g10990Os.11679.1.S2_a_at11/1110+5846058..5853917mutant TFIIF-alpha, putative, expressed
LOC_Os10g11012OsAffx.20652.1.S1_at11/1110+5859215..5863359hypothetical protein
LOC_Os10g11012OsAffx.20652.1.S1_x_at11/1110+5859215..5863359hypothetical protein
LOC_Os10g11012OsAffx.24912.1.S1_at1/1110+5859215..5863359hypothetical protein
LOC_Os10g11034Os.10707.3.S1_x_at11/1110+5870557..5876316PAP/25A associated domain containing protein, expressed
LOC_Os10g11034Os.10707.2.S1_x_at10/1110+5870557..5876316PAP/25A associated domain containing protein, expressed
LOC_Os10g11034Os.10707.2.S1_at10/1110+5870557..5876316PAP/25A associated domain containing protein, expressed
LOC_Os10g11034Os.50043.1.A1_at1/1110+5870557..5876316PAP/25A associated domain containing protein, expressed
LOC_Os10g11034Os.10675.1.A1_at1/1110+5870557..5876316PAP/25A associated domain containing protein, expressed
LOC_Os10g11060Os.46712.1.S1_x_at11/1110+5877600..5881295expressed protein
LOC_Os10g11060Os.50623.1.S1_at10/1110+5877600..5881295expressed protein
LOC_Os10g11070OsAffx.20650.1.S1_at11/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11070Os.46012.2.S1_x_at2/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11070Os.46012.3.S1_x_at2/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11070Os.27088.1.A1_x_at1/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11070OsAffx.3521.1.S1_at1/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11070OsAffx.3521.1.S1_x_at1/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11070OsAffx.20650.2.S1_at1/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11080OsAffx.30387.1.S1_at11/1110+5892614..5894925hypothetical protein
LOC_Os10g11080Os.54408.1.S1_x_at1/1110+5892614..5894925hypothetical protein
LOC_Os10g11080Os.54408.1.S1_at1/1110+5892614..5894925hypothetical protein
LOC_Os10g11090Os.2235.3.S1_x_at11/1110+5900922..5902664retrotransposon protein, putative, unclassified
LOC_Os10g11100Os.46874.1.S1_at11/1110+5904132..5909191retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g11100Os.46874.1.S1_x_at11/1110+5904132..5909191retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g11100Os.8976.1.S1_at4/1110+5904132..5909191retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g11100Os.38444.1.S1_x_at2/1110+5904132..5909191retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g11100Os.38444.2.S1_x_at1/1110+5904132..5909191retrotransposon protein, putative, Ty3-gypsy subclass, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50623.1.S1_at--686--6271Chr10:5880750..5880774 (25 bp)
GATGTCTCTGTAAGTTCAGATCCCT
LOC_Os10g11060
Os.50623.1.S1_at--78--1231Chr10:5880762..5880786 (25 bp)
AGTTCAGATCCCTGTGGTCATCAAC
LOC_Os10g11060
Os.50623.1.S1_at--450--8671Chr10:5880774..5880798 (25 bp)
TGTGGTCATCAACCTGATCGAGTCC
LOC_Os10g11060
Os.50623.1.S1_at--970--2611Chr10:5880784..5880808 (25 bp)
AACCTGATCGAGTCCCTCATAAATT
LOC_Os10g11060
Os.50623.1.S1_at--64--6111Chr10:5880793..5880817 (25 bp)
GAGTCCCTCATAAATTGTCGAAAAT
LOC_Os10g11060
Os.50623.1.S1_at--1031--7211Chr10:5880809..5880833 (25 bp)
GTCGAAAATCTGTCCTTTCCTGATT
LOC_Os10g11060
Os.50623.1.S1_at--1004--3671Chr10:5880823..5880847 (25 bp)
CTTTCCTGATTCTCACTCTATGTAA
LOC_Os10g11060
Os.50623.1.S1_at--41--9531Chr10:5880833..5880857 (25 bp)
TCTCACTCTATGTAATTATCAGGGT
LOC_Os10g11060
Os.50623.1.S1_at--218--871Chr10:5881111..5881135 (25 bp)
ATGGCCGTACATGATTCTAGGGTTT
LOC_Os10g11060
Os.50623.1.S1_at--891--4933Chr10:5881209..5881233 (25 bp)
GCATTATTGATTATTTGTTTACCAA
LOC_Os10g11060
Os.50623.1.S1_at--279--9811Chr10:5881316..5881340 (25 bp)
TAACGTGTCAGTAATTCTTTGGAGT
NONE
Target Sequence 
GATGTCTCTGTAAGTTCAGATCCCTGTGGTCATCAACCTGATCGAGTCCCTCATAAATTGTCGAAAATCTGTCCTTTCCT
GATTCTCACTCTATGTAATTATCAGGGTATGAATACTGCACAGCATGCAACCACAAGTTCAGTGCCTCAGCAGGCTGCGG
CACAAAATCCTCAAAATGCACCTAGCCCTGCAAATAATGCCAACCATGACTCCAGCGGACTATCCCAGCAGCAAAGACCT
GCCGATGCAGAAAGGAAGAGGAGACCATCACAAATGGGACGGGGGAGAGGGGGTGTGATGATCCTCCCCAAGGGAAGAGG
AAGTTCAGGGTCAGGATGGACAGGTGCTGGGTTTGATGTAGATGGCCGTACATGATTCTAGGGTTTGTAGTTACGTTTGA
ATTGTTGAAAATTAGAATTATCTCAGGAGTTCCAGGGCAAACAACAGTGAGAATGTAATGCATTATTGATTATTTGTTTA
CCAAATATATATGTTGACATGTGTAGCAAAATATTCAAAGTGTAACTGCCAATACAGTAAAAGAGTTTATTTGATTATAT
ATCGAATAACGTGTCAGTAATTCTTTGGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50623.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis