Browse Element(s) Details


Os.50641.2.S1_a_at

Description gb:AY177694.1
DB_XREF= gi:30313672
TID=Os.50641.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50641 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) transcription factor MADS23 mRNA, complete cds.
PROD=transcription factor MADS23
FL= gb:AY177694.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g334889/11Agamous-like MADS box protein AGL21, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g33450Os.14919.1.S1_at4/118+20733956..20739429hypothetical protein
LOC_Os08g33450OsAffx.29313.1.S1_at1/118+20733956..20739429hypothetical protein
LOC_Os08g33460Os.7046.1.S1_at11/118+20740742..20741523expressed protein
LOC_Os08g33470OsAffx.29490.1.S1_at11/118+20746061..20746417hypothetical protein
LOC_Os08g33479Os.54324.1.S1_at10/118+20751081..20753399expressed protein
LOC_Os08g33488Os.50641.2.S1_a_at9/118+20764386..20774039Agamous-like MADS box protein AGL21, putative, expressed
LOC_Os08g33488Os.50641.1.S1_at9/118+20764386..20774039Agamous-like MADS box protein AGL21, putative, expressed
LOC_Os08g33488OsAffx.29491.1.S1_at1/118+20764386..20774039Agamous-like MADS box protein AGL21, putative, expressed
LOC_Os08g33500NANA8+20775648..20778980transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g33510Os.47463.1.S1_x_at6/118+20781892..20785590transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g33510Os.14491.2.S1_x_at5/118+20781892..20785590transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g33520OsAffx.29492.1.S1_at11/118+20791650..20793954hypothetical protein
LOC_Os08g33530OsAffx.17313.1.S1_at11/118+20798456..20799247TCP family transcription factor containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0007584biological_processresponse to nutrient
GO:0048440biological_processcarpel development
GO:0048443biological_processstamen development
GO:0048497biological_processmaintenance of floral organ identity
GO:0048527biological_processlateral root development
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50641.2.S1_a_at--528--1831Chr08:20773949..20773973 (25 bp)
ACGCGACGAGCCGACAGGTGACATT
LOC_Os08g33488
Os.50641.2.S1_a_at--254--4611Chr08:20773947..20773971 (25 bp)
GCGACGAGCCGACAGGTGACATTCT
LOC_Os08g33488
Os.50641.2.S1_a_at--665--1491Chr08:20773839..20773863 (25 bp)
AGCACCAGCCGTCTCTATGACTTTG
LOC_Os08g33488
Os.50641.2.S1_a_at--1017--1671Chr08:20773833..20773857 (25 bp)
AGCCGTCTCTATGACTTTGCCAGCT
LOC_Os08g33488
Os.50641.2.S1_a_at--567--8951NONE
TGACTTTGCCAGCTCCAGCATGAAA
NONE
Os.50641.2.S1_a_at--876--4411NONE
GCCAGCTCCAGCATGAAATCCATAA
NONE
Os.50641.2.S1_a_at--452--4791Chr08:20771713..20771734 (22 bp)
GCTCCAGCATGAAATCCATAATTGA
LOC_Os08g33488
Os.50641.2.S1_a_at--786--671Chr08:20771680..20771704 (25 bp)
ATGAGACGAAAGAAGATCCCCATCA
LOC_Os08g33488
Os.50641.2.S1_a_at--795--1431Chr08:20771670..20771694 (25 bp)
AGAAGATCCCCATCAAACCATGAAC
LOC_Os08g33488
Os.50641.2.S1_a_at--154--9311Chr08:20771664..20771688 (25 bp)
TCCCCATCAAACCATGAACGCAAGT
LOC_Os08g33488
Os.50641.2.S1_a_at--735--4331Chr08:20771653..20771677 (25 bp)
CCATGAACGCAAGTTCTGAGGCAAA
LOC_Os08g33488
Target Sequence 
ACGCGACGAGCCGACAGGTGACATTCTCGAAGCGGCGGAGCGGGCTGTTCAAGAAGGCGAGGGAGCTCTCCATCCTCTGC
GATGCCGAGGTCGGCCTCCTCGTCTTCTCCAGCACCAGCCGTCTCTATGACTTTGCCAGCTCCAGCATGAAATCCATAAT
TGAGAGATACAATGAGACGAAAGAAGATCCCCATCAAACCATGAACGCAAGTTCTGAGGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50641.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis