Browse Element(s) Details


Os.50672.1.S2_x_at

Description gb:AK110271.1
DB_XREF= gi:32995480
TID=Os.50672.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50672 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-178-B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-163-C10, full insert sequence.
FL= gb:AK111191.1 gb:AK110271.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0214011/11Leucine Rich Repeat family protein, expressed
LOC_Os08g034602/11hypothetical protein
LOC_Os03g051401/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02090OsAffx.11863.1.S1_at11/112+613113..613532peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein
LOC_Os02g02100NANA2+619851..622715retrotransposon protein, putative, unclassified
LOC_Os02g02110Os.27016.3.S1_x_at4/112+623174..626119dolichyl-phosphate-mannose-glycolipid alpha-mannosyltransferase, putative
LOC_Os02g02120Os.27382.2.S1_at11/112+627685..630534wall-associated kinase 3, putative, expressed
LOC_Os02g02130Os.38814.1.S1_at7/112+633642..63560860S ribosomal protein L37, putative
LOC_Os02g02130Os.50740.1.S1_x_at4/112+633642..63560860S ribosomal protein L37, putative
LOC_Os02g02130Os.50728.1.S1_x_at3/112+633642..63560860S ribosomal protein L37, putative
LOC_Os02g02130Os.50740.1.S1_at2/112+633642..63560860S ribosomal protein L37, putative
LOC_Os02g02130Os.50741.1.S1_at2/112+633642..63560860S ribosomal protein L37, putative
LOC_Os02g02130Os.50727.1.S1_x_at1/112+633642..63560860S ribosomal protein L37, putative
LOC_Os02g02140Os.50672.1.S2_x_at11/112+637013..640452Leucine Rich Repeat family protein, expressed
LOC_Os02g02140Os.50672.1.S2_at11/112+637013..640452Leucine Rich Repeat family protein, expressed
LOC_Os02g02140Os.50672.1.S1_at11/112+637013..640452Leucine Rich Repeat family protein, expressed
LOC_Os02g02140Os.50672.1.S1_x_at11/112+637013..640452Leucine Rich Repeat family protein, expressed
LOC_Os02g02150Os.49918.1.S1_at11/112+646112..649305DEAD/DEAH box helicase family protein, expressed
LOC_Os02g02160OsAffx.24060.1.S1_at11/112+650534..651349expressed protein
LOC_Os02g02170Os.49093.1.S1_a_at11/112+655324..657243High affinity nitrate transporter, putative, expressed
LOC_Os02g02170Os.49093.1.S1_at10/112+655324..657243High affinity nitrate transporter, putative, expressed
LOC_Os02g02170Os.49093.2.S1_x_at8/112+655324..657243High affinity nitrate transporter, putative, expressed
LOC_Os02g02180NANA2+659690..660670hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009729biological_processdetection of brassinosteroid stimulus
GO:0009742biological_processbrassinosteroid mediated signaling
GO:0009826biological_processunidimensional cell growth
GO:0005768cellular_componentendosome
GO:0005886cellular_componentplasma membrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0042803molecular_functionprotein homodimerization activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50672.1.S2_x_at--1146--512Chr03:2475316..2475339 (24 bp)
ATCGCGCCGGAGTACGGGTACACGA
LOC_Os03g05140
Os.50672.1.S2_x_at--521--7731Chr02:637549..637573 (25 bp)
GGTGGACCAGAAGAGCGACACGTAC
LOC_Os02g02140
Os.50672.1.S2_x_at--2--991Chr02:637355..637379 (25 bp)
AGGAGATGCTGCTGGTGCTCCGCAT
LOC_Os02g02140
Os.50672.1.S2_x_at--342--7911Chr02:637310..637334 (25 bp)
GGTTGCCGCGCGACAGGCCGTCCAT
LOC_Os02g02140
Os.50672.1.S2_x_at--384--7271Chr02:637291..637315 (25 bp)
GTCCATGCGCGACGTCATCACCATG
LOC_Os02g02140
Os.50672.1.S2_x_at--43--3571Chr02:637276..637300 (25 bp)
CATCACCATGCTCGGCGAGGCCAAG
LOC_Os02g02140
Os.50672.1.S2_x_at--270--2651Chr02:637158..637182 (25 bp)
AAGCCGGTGTTCACCACGACGCCGG
LOC_Os02g02140
Os.50672.1.S2_x_at--283--8111Chr02:637135..637159 (25 bp)
GGACTCCGACTACGCTTAGCTGTGT
LOC_Os02g02140
Os.50672.1.S2_x_at--368--1832Chr08:1620120..1620139 (20 bp)
ACGCTTAGCTGTGTCCATTTTCTTT
LOC_Os08g03460
Os.50672.1.S2_x_at--371--10371Chr02:637090..637114 (25 bp)
TTTTTTCTTCGGTGCATGTTAATGA
LOC_Os02g02140
Os.50672.1.S2_x_at--1119--1352Chr08:1619168..1619197 (25 bp)
GTAACAAACCAACAACCATTTTCTG
LOC_Os08g03460
Target Sequence 
ATCGCGCCGGAGTACGGGTACACGATGAAGGTGGACCAGAAGAGCGACACGTACNGCTACGGCGTGGTGCTGATGGAGCT
CATCACCGGGAGGAGGGCNGTGGAGGCGGCGTNCGGCNGAGGGGCNGGACATCGTCGGNCTGGGTGCGCANCNAGATNCN
GAGCAACACGGNTGGAGGACCACCTCNANCGGCCAGCTCGTCGGCGCCGGCTGCCCGCACGTCAGGGAGGAGATGCTGCT
GGTGCTCCGCATCGCCGTGCTCTGCACCGCCAGGTTGCCGCGCGACAGGCCGTCCATGCGCGACGTCATCACCATGCTCG
GCGAGGCCAAGCCGCGCCGCAAGAGCGGCAGCTCCACCGGCAGCGCCAGCGCCAAAGCCCCCACTCCGGCGCCGCCGGCG
GTGGCGGCGGTGGTGGACAAGGACAAGCCGGTGTTCACCACGACGCCGGACTCCGACTACGCTTAGCTGTGTCCATTTTC
TTTCTTCCTTTTTTTTTCTTCGGTGCATGTTAATGATTTGTTCATGTATGTAGATTATTCTAAAAAAATTGTAAGAATTT
TGAGCTTGTAACAAACCAACAACCATTTTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50672.1.S2_x_at     

Putative homologies in rice

Putative homologies in arabidopsis