Browse Element(s) Details


Os.50704.1.S1_at

Description gb:AJ494956.1
DB_XREF= gi:27527490
TID=Os.50704.1
CNT=5
FEA=RNA
TIER=ConsEnd
STK=0
UG=Os.50704 (NCBI UniGene Cluster)
UG_TITLE=Z247e snoRNA
DEF=Oryza sativa Z247b snoRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3051011/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g1742011/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g0105010/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30480OsAffx.6822.1.S1_at11/1110+15528789..15529881hypothetical protein
LOC_Os10g30480OsAffx.6822.1.S1_x_at10/1110+15528789..15529881hypothetical protein
LOC_Os10g30490NANA10+15530487..15530942hypothetical protein
LOC_Os10g30500OsAffx.18465.1.S1_at11/1110+15531955..15532221hypothetical protein
LOC_Os10g30510OsAffx.20303.1.S1_at11/1110+15534578..15538939retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g30510Os.50704.1.S1_at11/1110+15534578..15538939retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g30510OsAffx.10048.1.S1_x_at1/1110+15534578..15538939retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g30520Os.34773.1.S1_at11/1110+15539899..15544169Ras-related protein RHN1, putative, expressed
LOC_Os10g30530Os.46882.1.S1_at11/1110+15544922..15547170lectin protein kinase, putative, expressed
LOC_Os10g30540Os.46490.1.S1_at11/1110+15548312..15550657lectin protein kinase, putative, expressed
LOC_Os10g30540OsAffx.15098.1.S1_at1/1110+15548312..15550657lectin protein kinase, putative, expressed
LOC_Os10g30550Os.46675.1.S1_at10/1110+15555578..15564215methyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50704.1.S1_at--114--10793Chr10:15535118..15535142 (25 bp)
TTGATTATAATCCTGTTGTGTCCTC
LOC_Os10g30510
Os.50704.1.S1_at--544--6553Chr10:15535120..15535144 (25 bp)
GATTATAATCCTGTTGTGTCCTCGA
LOC_Os10g30510
Os.50704.1.S1_at--890--153Chr10:15535121..15535145 (25 bp)
ATTATAATCCTGTTGTGTCCTCGAT
LOC_Os10g30510
Os.50704.1.S1_at--1137--10413Chr10:15535122..15535146 (25 bp)
TTATAATCCTGTTGTGTCCTCGATT
LOC_Os10g30510
Os.50704.1.S1_at--866--353Chr10:15535124..15535148 (25 bp)
ATAATCCTGTTGTGTCCTCGATTAC
LOC_Os10g30510
Os.50704.1.S1_at--99--9773Chr10:15535125..15535149 (25 bp)
TAATCCTGTTGTGTCCTCGATTACG
LOC_Os10g30510
Os.50704.1.S1_at--1084--3033Chr10:15535126..15535150 (25 bp)
AATCCTGTTGTGTCCTCGATTACGG
LOC_Os10g30510
Os.50704.1.S1_at--1133--553Chr10:15535127..15535151 (25 bp)
ATCCTGTTGTGTCCTCGATTACGGG
LOC_Os10g30510
Os.50704.1.S1_at--654--9273Chr10:15535128..15535152 (25 bp)
TCCTGTTGTGTCCTCGATTACGGGA
LOC_Os10g30510
Os.50704.1.S1_at--171--8812Chr10:15535131..15535155 (25 bp)
TGTTGTGTCCTCGATTACGGGACGC
LOC_Os10g30510
Os.50704.1.S1_at--1027--10833Chr10:15535133..15535157 (25 bp)
TTGTGTCCTCGATTACGGGACGCAC
LOC_Os10g30510
Target Sequence 
TTGATTATAATCCTGTTGTGTCCTCGATTACGGGACGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50704.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis