Browse Element(s) Details


Os.5072.1.S1_at

Description gb:AK103027.1
DB_XREF= gi:32988236
TID=Os.5072.1
CNT=108
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.5072 (NCBI UniGene Cluster)
UG_TITLE=Beta-glucosidase mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033117C01, full insert sequence.
FL= gb:AK100165.1 gb:AK103027.1 gb:AK059920.1 gb:U28047.2 gb:AK105026.2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4960011/11Glycosyl hydrolase family 1 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49540NANA3+28162617..28165110transposon protein, putative, Mutator sub-class
LOC_Os03g49550Os.51915.2.S1_at11/113+28168877..28170460UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os03g49560NANA3+28173871..28174470hypothetical protein
LOC_Os03g49570Os.10801.1.S1_a_at11/113+28178462..28183265phosphate translocator, putative, expressed
LOC_Os03g49580Os.16924.1.S1_at11/113+28185367..28188518Eukaryotic peptide chain release factor subunit 1-2, putative, expressed
LOC_Os03g49590OsAffx.13424.1.S1_at11/113+28188570..28189223hypothetical protein
LOC_Os03g49600Os.5072.1.S1_at11/113+28189476..28194516Glycosyl hydrolase family 1 protein, expressed
LOC_Os03g49610Os.32141.1.S1_at11/113+28197907..28203199Glycosyl hydrolase family 1 protein, expressed
LOC_Os03g49620Os.18919.1.A1_at11/113+28203607..28209054BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os03g49630Os.27346.1.S1_at11/113+28209757..28215653expressed protein
LOC_Os03g49640Os.14595.1.S1_at11/113+28218775..28224883Mitogen-activated protein kinase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5072.1.S1_at--154--8211Chr03:28190068..28190092 (25 bp)
GGAATGGATCAACCTGCGAACCTCA
LOC_Os03g49600
Os.5072.1.S1_at--808--1171Chr03:28190034..28190058 (25 bp)
AGTACTTGCGCGACACCACGAGGGT
LOC_Os03g49600
Os.5072.1.S1_at--839--6131Chr03:28190015..28190039 (25 bp)
GAGGGTTCATTTCTACAGGAGCTAC
LOC_Os03g49600
Os.5072.1.S1_at--858--4631Chr03:28189907..28189931 (25 bp)
GCTGTCAGGTTACACGTCCAAGTTT
LOC_Os03g49600
Os.5072.1.S1_at--981--10851Chr03:28189884..28189908 (25 bp)
TTGGTATCGTCTACGTCGACTTCAA
LOC_Os03g49600
Os.5072.1.S1_at--917--8571Chr03:28189825..28189849 (25 bp)
TGGTTCAGGGACATGCTAAAGCACT
LOC_Os03g49600
Os.5072.1.S1_at--80--5351Chr03:28189772..28189796 (25 bp)
GAAGTTGCCATCCATTGATCATCAT
LOC_Os03g49600
Os.5072.1.S1_at--825--411Chr03:28189752..28189776 (25 bp)
ATCATGTTCAGTTCTAGGCTGCCGC
LOC_Os03g49600
Os.5072.1.S1_at--837--911Chr03:28189737..28189761 (25 bp)
AGGCTGCCGCTTGGATGGCATCAGA
LOC_Os03g49600
Os.5072.1.S1_at--1113--6431Chr03:28189643..28189667 (25 bp)
GATCAGAATTGTGGCCGTCTAGTGA
LOC_Os03g49600
Os.5072.1.S1_at--972--6991Chr03:28189606..28189630 (25 bp)
GTACTCTTGATGTGTGATCGATCTT
LOC_Os03g49600
Target Sequence 
GGAATGGATCAACCTGCGAACCTCAGCCGCGACCAGTACTTGCGCGACACCACGAGGGTTCATTTCTACAGGAGCTACCT
CACCCAGCTGAAGAAGGCCATCGACGAGGGCGCCAATGTGGCTGGCTACTTCGCCTGGTCTCTCCTGGACAACTTCGAGT
GGCTGTCAGGTTACACGTCCAAGTTTGGTATCGTCTACGTCGACTTCAACACGCTCGAGCGCCACCCCAAGGCGTCGGCC
TACTGGTTCAGGGACATGCTAAAGCACTGAGAATGAAAGACACGCAGACTGAAGTTGAAGTTGCCATCCATTGATCATCA
TGTTCAGTTCTAGGCTGCCGCTTGGATGGCATCAGAGCTGGCTATGAACTATGTGATGGAAATAAAAGGACTGCAAATTG
ATTCGATTATGCAATTCGTGTCTATGATCAGAATTGTGGCCGTCTAGTGAACTTGTAGAAGTGTACTCTTGATGTGTGAT
CGATCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5072.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis