Browse Element(s) Details


Os.50765.1.S1_at

Description gb:AK058412.1
DB_XREF= gi:32968430
TID=Os.50765.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50765 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-015-C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-015-C11, full insert sequence.
FL= gb:AK058412.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1261011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12580OsAffx.28419.1.S1_at11/117+7180720..7181108hypothetical protein
LOC_Os07g12590Os.23876.1.S1_at11/117+7182309..7185281F-box domain containing protein, expressed
LOC_Os07g12590OsAffx.16229.1.S1_x_at1/117+7182309..7185281F-box domain containing protein, expressed
LOC_Os07g12600Os.52957.1.S1_at11/117+7196890..7200216F-box domain containing protein, expressed
LOC_Os07g12600OsAffx.16229.1.S1_x_at7/117+7196890..7200216F-box domain containing protein, expressed
LOC_Os07g12610Os.50765.1.S1_at11/117+7204847..7207841F-box domain containing protein, expressed
LOC_Os07g12620OsAffx.5303.1.S1_at2/117+7212956..7213675hypothetical protein
LOC_Os07g12630Os.49557.1.S1_at11/117+7222897..7226547transcription elongation factor S-II family protein, expressed
LOC_Os07g12640Os.18760.1.A1_at10/117+7227470..7230598NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus family protein, expressed
LOC_Os07g12650Os.53151.1.S1_at11/117+7231456..723350140S ribosomal protein S12, putative, expressed
LOC_Os07g12650Os.12061.1.S1_s_at11/117+7231456..723350140S ribosomal protein S12, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50765.1.S1_at--788--1551Chr07:7205165..7205189 (25 bp)
AGCTAGGGTGAAGTATAGTGCAGCA
LOC_Os07g12610
Os.50765.1.S1_at--1127--10311Chr07:7205063..7205087 (25 bp)
TTTCAGATCAACTAGAGTCAAAGAT
LOC_Os07g12610
Os.50765.1.S1_at--611--6091Chr07:7205049..7205073 (25 bp)
GAGTCAAAGATGTTCGTCTGTCATG
LOC_Os07g12610
Os.50765.1.S1_at--283--1311Chr07:7205042..7205066 (25 bp)
AGATGTTCGTCTGTCATGATAGAGG
LOC_Os07g12610
Os.50765.1.S1_at--1058--10171Chr07:7205010..7205034 (25 bp)
TATACTTGGGTATTGTTGACTGCAC
LOC_Os07g12610
Os.50765.1.S1_at--208--7691Chr07:7205002..7205027 (25 bp)
GGGTATTGTTGACTGCACCACTAAC
LOC_Os07g12610
Os.50765.1.S1_at--129--8951Chr07:7204993..7205018 (25 bp)
TGACTGCACCACTAACAACTTGGGC
LOC_Os07g12610
Os.50765.1.S1_at--239--10831Chr07:7204974..7204998 (25 bp)
TTGGGCCCCAACGTGTGTTTACATT
LOC_Os07g12610
Os.50765.1.S1_at--736--1911Chr07:7204964..7204988 (25 bp)
ACGTGTGTTTACATTCTCTGAGGAA
LOC_Os07g12610
Os.50765.1.S1_at--962--10531Chr07:7204951..7204975 (25 bp)
TTCTCTGAGGAACGTTTCCAACATG
LOC_Os07g12610
Os.50765.1.S1_at--572--4371Chr07:7204934..7204958 (25 bp)
CCAACATGCATTTGGAAGTTTTCTT
LOC_Os07g12610
Target Sequence 
AGCTAGGGTGAAGTATAGTGCAGCAAACTAGACCTAGAGATGATTAACTCACGATGAAATGGAGCACAGTAATCACCGAA
ACCAGGCAATTTCAGGCCTTCCTTTCAGATCAACTAGAGTCAAAGATGTTCGTCTGTCATGATAGAGGATTGTCGTATAC
TTGGGTATTGTTGACTGCACCACTAACAACTTGGGCCCCAACGTGTGTTTACATTCTCTGAGGAACGTTTCCAACATGCA
TTTGGAAGTTTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50765.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis