Browse Element(s) Details


Os.50770.1.S1_at

Description gb:AK058435.1
DB_XREF= gi:32968453
TID=Os.50770.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50770 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-015-F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-015-F06, full insert sequence.
FL= gb:AK058435.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1430411/11Calcium binding EGF domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g14240OsAffx.26029.1.S1_at11/114+7964246..7965016hypothetical protein
LOC_Os04g14250OsAffx.26030.1.S1_at11/114+7965488..7969649hypothetical protein
LOC_Os04g14250Os.51283.1.S1_at6/114+7965488..7969649hypothetical protein
LOC_Os04g14250OsAffx.10309.1.S1_x_at1/114+7965488..7969649hypothetical protein
LOC_Os04g14260OsAffx.25936.7.S1_s_at11/114+7970583..7973140transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g14260OsAffx.25936.1.S1_s_at11/114+7970583..7973140transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g14260OsAffx.25936.2.S1_x_at3/114+7970583..7973140transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g14260OsAffx.25936.5.S1_x_at2/114+7970583..7973140transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g14270NANA4+7976000..7976638hypothetical protein
LOC_Os04g14280Os.10827.1.S1_x_at8/114+7977228..7980054transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g14280Os.46055.2.S1_x_at5/114+7977228..7980054transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g14290OsAffx.13815.1.S1_at9/114+7986306..7987295hypothetical protein
LOC_Os04g14304Os.50770.1.S1_at11/114+7988860..7998379Calcium binding EGF domain containing protein, expressed
LOC_Os04g14304OsAffx.12953.1.S1_at1/114+7988860..7998379Calcium binding EGF domain containing protein, expressed
LOC_Os04g14320OsAffx.3789.1.S1_at11/114+8004098..8005149hypothetical protein
LOC_Os04g14330Os.2987.3.S1_x_at3/114+8007020..8008002retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g14340Os.55004.1.S1_at2/114+8013146..8017807retrotransposon protein, putative, unclassified, expressed
LOC_Os04g14350OsAffx.26032.1.S1_at11/114+8018364..8019129hypothetical protein
LOC_Os04g14360OsAffx.3790.1.S1_at11/114+8020498..8022115hypothetical protein
LOC_Os04g14370OsAffx.18604.2.S1_at11/114+8022985..8026614hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50770.1.S1_at--921--10431Chr04:7993692..7993716 (25 bp)
TTATGATAGTCCCTTCGGCGCATGT
LOC_Os04g14304
Os.50770.1.S1_at--680--8391Chr04:7993708..7993732 (25 bp)
GGCGCATGTCATAGCAACCACAGCA
LOC_Os04g14304
Os.50770.1.S1_at--345--1491Chr04:7993729..7993753 (25 bp)
AGCAAATGCGCCAATGTCACCAGTG
LOC_Os04g14304
Os.50770.1.S1_at--1132--171Chr04:7993766..7993790 (25 bp)
ATTTTTGCAACTGCTCCGAGGGATA
LOC_Os04g14304
Os.50770.1.S1_at--313--10871Chr04:7993793..7993817 (25 bp)
TTGGCAATCCGTACATACCAGATGG
LOC_Os04g14304
Os.50770.1.S1_at--602--10271Chr04:7998118..7998142 (25 bp)
TTTGCAGCATGCCATACATTCCACA
LOC_Os04g14304
Os.50770.1.S1_at--89--6731Chr04:7998172..7998196 (25 bp)
GTTCTGCATTCCATGTATACACCAT
LOC_Os04g14304
Os.50770.1.S1_at--712--6891Chr04:7998186..7998210 (25 bp)
GTATACACCATATTTGCATTGCACT
LOC_Os04g14304
Os.50770.1.S1_at--473--8331Chr04:7998271..7998295 (25 bp)
GGCTGTGCCTAAATGTTATCTTTTC
LOC_Os04g14304
Os.50770.1.S1_at--528--431Chr04:7998288..7998312 (25 bp)
ATCTTTTCGCATGAGCATAGACCAT
LOC_Os04g14304
Os.50770.1.S1_at--695--1371Chr04:7998306..7998330 (25 bp)
AGACCATGTGGTTGTGCCTAAATTA
LOC_Os04g14304
Target Sequence 
TTATGATAGTCCCTTCGGCGCATGTCATAGCAACCACAGCAAATGCGCCAATGTCACCAGTGGTTTGGATGGCTATTTTT
GCAACTGCTCCGAGGGATACATTGGCAATCCGTACATACCAGATGGATGCAAAGATGTTAATGAGTGTGAAAACAATTCT
ATTTGTGGTGCTGGGTCCACATGCAAGAATACAGAAGGTAGCTATCGTTGTGACTGCAATTTCGGCCAAAGACGTGACAA
TAGTTCTGATAACATGGGTAATTGTGAACCCATATTTTCCAGAGCTGCCATAGCAGTCATAGGTGAGGTTCAATACATGA
ATGCAATGTTGATTGAAATTTGCAGCATGCCATACATTCCACATATAATATATAATGCTCTAATTACATGCAGTTCTGCA
TTCCATGTATACACCATATTTGCATTGCACTACATTCAACTTGAAGCTCAACATTGAAGTGTGAAAACATAATTATTTCC
AGATAGACCATGGCTGTGCCTAAATGTTATCTTTTCGCATGAGCATAGACCATGTGGTTGTGCCTAAATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50770.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis