Browse Element(s) Details


Os.50827.1.S1_x_at

Description gb:AK058820.1
DB_XREF= gi:32968838
TID=Os.50827.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.50827 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-003-G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-003-G08, full insert sequence.
FL= gb:AK058820.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1019011/11ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g10160OsAffx.6631.1.S1_at11/1110+5336964..5340250hypothetical protein
LOC_Os10g10170Os.19627.1.S1_a_at11/1110+5343540..5351016pentatricopeptide, putative, expressed
LOC_Os10g10180Os.8014.2.S1_x_at11/1110+5358976..5361780CMV 1a interacting protein 1, putative, expressed
LOC_Os10g10180Os.8014.1.S1_at10/1110+5358976..5361780CMV 1a interacting protein 1, putative, expressed
LOC_Os10g10180Os.30608.1.S1_at6/1110+5358976..5361780CMV 1a interacting protein 1, putative, expressed
LOC_Os10g10180Os.30608.1.S1_x_at5/1110+5358976..5361780CMV 1a interacting protein 1, putative, expressed
LOC_Os10g10190Os.50827.1.S1_x_at11/1110+5361092..5376517ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os10g10190Os.46916.1.S1_at1/1110+5361092..5376517ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os10g10190Os.11220.1.S1_at1/1110+5361092..5376517ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os10g10200OsAffx.8420.1.S1_x_at11/1110+5380238..5383712retrotransposon protein, putative, unclassified
LOC_Os10g10200OsAffx.8420.1.S1_at11/1110+5380238..5383712retrotransposon protein, putative, unclassified
LOC_Os10g10200OsAffx.22927.2.S1_x_at1/1110+5380238..5383712retrotransposon protein, putative, unclassified
LOC_Os10g10214OsAffx.21171.4.S1_x_at2/1110+5384615..5388949transposon protein, putative, unclassified
LOC_Os10g10214OsAffx.21171.3.S1_x_at1/1110+5384615..5388949transposon protein, putative, unclassified
LOC_Os10g10230OsAffx.18202.1.S1_at6/1110+5392988..5395183retrotransposon, putative, centromere-specific
LOC_Os10g10230OsAffx.8356.1.S1_x_at1/1110+5392988..5395183retrotransposon, putative, centromere-specific
LOC_Os10g10230Os.54774.1.S1_x_at1/1110+5392988..5395183retrotransposon, putative, centromere-specific
LOC_Os10g10244Os.11722.1.S1_a_at11/1110+5398540..5409129Alanyl-tRNA synthetase, mitochondrial precursor, putative, expressed
LOC_Os10g10244Os.11722.3.S1_at11/1110+5398540..5409129Alanyl-tRNA synthetase, mitochondrial precursor, putative, expressed
LOC_Os10g10244Os.11722.3.S1_x_at10/1110+5398540..5409129Alanyl-tRNA synthetase, mitochondrial precursor, putative, expressed
LOC_Os10g10244OsAffx.20054.1.S1_at1/1110+5398540..5409129Alanyl-tRNA synthetase, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50827.1.S1_x_at--231--1271Chr10:5364525..5364549 (25 bp)
AGATATTGGCTCTGAAGGTGCACTT
LOC_Os10g10190
Os.50827.1.S1_x_at--322--1051Chr10:5364510..5364534 (25 bp)
AGGTGCACTTGATCCCTATATCATG
LOC_Os10g10190
Os.50827.1.S1_x_at--1020--2091Chr10:5363978..5364490 (25 bp)
ACATCGGTCTGTTCACAAGGCGTGA
LOC_Os10g10190
Os.50827.1.S1_x_at--1018--1091Chr10:5363794..5363818 (25 bp)
AGTGTGCTCAGCTTGCTGATGACCT
LOC_Os10g10190
Os.50827.1.S1_x_at--442--6431Chr10:5362148..5362172 (25 bp)
GATCTTGCTAGCAATTTTGCCAGTA
LOC_Os10g10190
Os.50827.1.S1_x_at--786--3391Chr10:5362096..5362120 (25 bp)
CAGCAGTACAGTCACGTCAAAGAAC
LOC_Os10g10190
Os.50827.1.S1_x_at--830--6091Chr10:5362051..5362075 (25 bp)
GAGTCCACCAATGCTACGGTATCTG
LOC_Os10g10190
Os.50827.1.S1_x_at--1036--131Chr10:5361975..5361999 (25 bp)
ATTATCAGACTCAAATCCCATGCAG
LOC_Os10g10190
Os.50827.1.S1_x_at--932--5031Chr10:5361954..5361978 (25 bp)
GCAGATTACTGTCCATCGCATTTTT
LOC_Os10g10190
Os.50827.1.S1_x_at--603--171Chr10:5361935..5361959 (25 bp)
ATTTTTTGCGTACTGTTCCATTCCA
LOC_Os10g10190
Os.50827.1.S1_x_at--431--71Chr10:5361917..5361941 (25 bp)
CATTCCACACCAGAGTACGGGTTTT
LOC_Os10g10190
Target Sequence 
AGATATTGGCTCTGAAGGTGCACTTGATCCCTATATCATGGAAAAGCTGAGTGAAGAAAACATCGGTCTGTTCACAAGGC
GTGAAGAACTTCGNCAACGAGATACACAGTTGAGGCAAACGGTNGGGGAGCTAGAGCAACAACTAGCGGAGACAAAAANG
AAGTGTGCTCAGCTTGCTGATGACCTGCGTATAAGGAAGAGCCAGCAGCAGCAGCAGCCCCCTTACATATAAAGGTTAAT
TTATCGGTGGACCACAGAGGTGCTAACAAACGNNCAAAGGTGTGATGTGCTGATCTTGCTAGCAATTTTGCCAGTAGAAA
AGTAGGTTAGCTCATANTTAATCCAGCAGTACAGTCACGTCAAAGAACTGTAGAAGTAAGTTAAAATCGAGTCCACCAAT
GCTACGGTATCTGATGTATAGATGAAGTGACTTCTGTGACTCGTGCTGATGTGCTTCAACTGTAATTATCAGACTCAAAT
CCCATGCAGATTACTGTCCATCGCATTTTTTGCGTACTGTTCCATTCCACACCAGAGTACGGGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50827.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis