Browse Element(s) Details


Os.50842.1.S1_at

Description gb:AK058933.1
DB_XREF= gi:32968951
TID=Os.50842.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50842 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-009-D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-009-D12, full insert sequence.
FL= gb:AK058933.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4914011/11ABC1 protein precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49090Os.24942.4.A1_x_at3/113+27913837..27916586hypothetical protein
LOC_Os03g49090Os.24942.4.A1_at3/113+27913837..27916586hypothetical protein
LOC_Os03g49100NANA3+27918211..27920730retrotransposon protein, putative, unclassified
LOC_Os03g49110OsAffx.21249.1.S1_at1/113+27921890..27923629hypothetical protein
LOC_Os03g49120Os.14919.1.S1_at6/113+27925177..27931137transposon protein, putative, Mutator sub-class
LOC_Os03g49120Os.56216.1.S1_at2/113+27925177..27931137transposon protein, putative, Mutator sub-class
LOC_Os03g49126OsAffx.3690.1.S1_at11/113+27933023..27935849expressed protein
LOC_Os03g49132OsAffx.25636.1.S1_at11/113+27936611..27938041hypothetical protein
LOC_Os03g49140Os.50842.1.S1_at11/113+27938468..27939630ABC1 protein precursor, putative, expressed
LOC_Os03g49150Os.7558.1.S1_s_at11/113+27947070..27950553Yippee, putative, expressed
LOC_Os03g49150Os.46756.1.S1_at11/113+27947070..27950553Yippee, putative, expressed
LOC_Os03g49160OsAffx.25637.1.S1_at11/113+27952610..27953506hypothetical protein
LOC_Os03g49170Os.11140.1.S1_at11/113+27957871..27961377Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os03g49180Os.9053.1.S1_at11/113+27964162..27968028Alkaline phytoceramidase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50842.1.S1_at--184--3431Chr03:27939572..27939596 (25 bp)
CAGAGCTTCTAAGGAGACTGCCAAG
LOC_Os03g49140
Os.50842.1.S1_at--57--5731Chr03:27939557..27939581 (25 bp)
GACTGCCAAGGGTCATCTTGTTGAT
LOC_Os03g49140
Os.50842.1.S1_at--649--3291Chr03:27939524..27939548 (25 bp)
CAAATGATTGTTTACGTTCCGTCAA
LOC_Os03g49140
Os.50842.1.S1_at--421--10651Chr03:27939512..27939532 (21 bp)
TTCCGTCAATCATGCCCTGGTTGGA
LOC_Os03g49140
Os.50842.1.S1_at--930--3511Chr03:27939087..27939522 (25 bp)
CATGCCCTGGTTGGAGGTTCTTCAA
LOC_Os03g49140
Os.50842.1.S1_at--722--10811Chr03:27939053..27939077 (25 bp)
TTGTAATCATTGGACGAATCTCTTC
LOC_Os03g49140
Os.50842.1.S1_at--531--9451Chr03:27939030..27939054 (25 bp)
TCTGAGGCTGTTTTGGAAGCTAAAA
LOC_Os03g49140
Os.50842.1.S1_at--433--10411Chr03:27938892..27938916 (25 bp)
TTATTGGCCTGTTAAGCAGCAGATC
LOC_Os03g49140
Os.50842.1.S1_at--709--5051Chr03:27938877..27938901 (25 bp)
GCAGCAGATCAGCATACCAACTATT
LOC_Os03g49140
Os.50842.1.S1_at--201--8591Chr03:27938758..27938782 (25 bp)
TGGTATACACCATTCTTTTTGGTTA
LOC_Os03g49140
Os.50842.1.S1_at--3--9811Chr03:27938735..27938759 (25 bp)
TAACCATTTTGCTACCAGGCTTTTC
LOC_Os03g49140
Target Sequence 
CAGAGCTTCTAAGGAGACTGCCAAGGGTCATCTTGTTGATGCTTAAAACAAATGATTGTTTACGTTCCGTCAATCATGCC
CTGGTTGGAGGTTCTTCAATGGAATCATTTGTAATCATTGGACGAATCTCTTCTGAGGCTGTTTTGGAAGCTAAAAGGAT
GAGTAGTAGATCAATTCTGAATAAACTAATGATATGGCTAGAGGAAATTTTACTGGAAGCTCGATTCTTTAGTTTGAAGT
TGCTGTTGTGTTTTATGCAGCTTAAGAAGNTTATTGGCCTGTTAAGCAGCAGATCAGCATACCAACTATTCTTGGACTAG
TGTAAAANTATTAGAAGCTGTCNATTTTAGNTTTTCNTTTTTGAGNAGAGAAAAGTGGCATTTAGNTTGAAAAATNCTTT
TTCTCTTTTTGGTATACACCATTCTTTTTGGTTAACCATTTTGCTACCAGGCTTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50842.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis